RNA id: XM_043225427.1


Basic Information

Item Value
RNA id XM_043225427.1
length 3208
RNA type mRNA
GC content 0.40
exon number 2
gene id si:ch211-148l7.4
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17423120 ~ 17426633 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAGTTCTCCAAACTGCCTTACGTTAAGTTTTGTAGAAGCGCGTGGAAGTTGAAGTGAAAGTCCGTGTGCATTGATTTAGACTCACAATTTTCGCGTTTTTGCGTTTAGGAACCTGAAAACGCCTGCTGTAATGTCCACATAGATGTGCGAGAAACCTATTTTGTGTGATACAAAGTCCTCGAACGGGAATATGGATTCTGTTCATTGCTGGAATGGGACAAAAGGTGATCAGATTCCCACTAGGGCTAGACCCATGTCGGACACCTTATCTAAACTGGCCCAACTGATCACTTGCATTGAGTACAAGCCAAAATCAAAGTCTTCCTTCATCTGCAAAGACTGCGGCCACAAATTCTCCGACCTGAAAAGTCTTGAGCGTCACCAGCAAAGAGAGCATGCACTACAAAAGCTCCATTGCTGTCAATGCTGTGGCCAAAAATTTGTTTTGCTCTCGAGTTTGCAGCTACACAAATGTTCTCATGCCTCATCCATGTGCCAGACGTGCATGGGGAAACCTCAGAGGGGTTCCTCTTGCCCTTCCTGCGGCACTGAATCAGCAGAAGATCCCTTTTATCACGATAATAGCCCCTATGCGTGTGCTCCATGCGGACAAGGCTTCAGCCACAAGCAAGAGCTGCTTCACCACCAGCAAGCGGGAGGCTGTCAGCCCGCCAAGACCCTCAAACCTCCTCCGCCTTCAGATGCCTCCTTACCTCCATCTCCTCCAAGCGCCAACTCATCTATTCCCACATGCACTTTGTGTCACAAAACCTTCCGTTCTTATGCTGGACTTGGTTGCCACATGCGCTTTTCCCATGCTCACGTGAAAAGCAGCACAGAGAACAAAAGAGTAGCCATAGTTAGTACAttcaagaagaagaagaaagttcTCATCTCGAGTATGTCGTTCCCATGCCGTTCCTGTGACAAATCATTTCCTAAGACATCGCTGCTTCATCAGCACAGGAAAGAGGAACACCGGCGGGAGATAAAGGTCAGGAAACTGCAGAGAACCTCTTTGAAGACCACCAGGCAGAGGCGGAAAGGTGAAACGTATCCATGCCTCCATTGCGGAAAAGAGTTCCTGCACCATCTAACGCTTCGGGCTCATTTTAGACACTACAGCTCTCACCACGAGATCCACCTCAAATTGAATGGCAAATCATCCAGCACTGACACAGCTGCGTCCTGCTCAAAGGCAGCAAAGCAGCTCCAACCTTTCCCAGGAAAAAGACCAAGAGGTAGACCTAGGACCAAAAATCTACCCGTTTTGATGGAAACCGCGCAAAAGGAAGAAGAGCAAACCGCTAGTGATGAAGACGAGGACGCCGAGTATCCTTGTACGTCATGCGAACAGGTCTTCAGTTCCAAAGCGAAGCTGTACGTCCACGAGAAAGTCCACAAGGAGCTCCCTGAGGAACGCGGTCAACCCGCCGACACGTGCAGGTGTTGTAGCGTGTGTACGGGTGGGATTCCCCTCGCTGAGATTCCAGAAGATTGTGAAAAGAAAGTCTATCACTGTGTGCCATGTGCCGAGGCGTTCATAGCCCTGAGCGCTTTTCTAGAGCACTGCCAGAAACATCTGATACGTGAAAATGAAGATGAATTCAGTGACGACTGAaagagcttcttttttttttttctttctttctttcttttttaaaaaattgttcacTCATTTTCTCACCAACATGTAATTCTAAACTagtttgtttacttttgttttgtttttgtttttaaaagaaccattGCATATGTTTAGACAAGTACCATGAAAGTGATTAAAAAAGAGAAGCGgatattctttacattttttgtgtttgcatataGGTTTTTGTGAcacacaaaatttaaaaaaaatatatttttggtgaactattattttaaaatctctgtcatcatttactcactctaaTATATTGTGGAGCACAAAATAagctattttgaaaaatgataaccaaaatgttttgtcaaattatttttcCATATAATAGATGTCAATTTCGGCTCGATTTTCAAAATGCGATCTTGACATGAGAgtaagtaaatgataacagggttttgggtgaactgtgcTTTTAAGGCCAGTGAAGTAATTCCGCAGATGTTCAGGCTATCAGGAATTCCATTCATCaggcattttttgttttgttaaactgtataaatatcagtattttacaggttttgattttGTGGGTATAATGTTGTGCGCAGGATAATTCAATCTTACCAATCTGAGCCAAACAATTGCATTTCGTCAGATACGGGTACCTAATTAAAACCACTTAAACTCAAAGCACAGTTTTGCTTCAGGTTCTATGTGTATATACCTCTATACAGATGTACATGTAGAAGTCATATCCATTATGTAACTGTGAGATATTTTAACACATACATTACTTCTGATTTCTAAATGGCCAGTGCCTAGCTGAAACACAAAACCAATTAAATGTATGTGCTGCTTTTTTGTTGTCTGTCAAGTTGGAGGATATAATATCTTTGCATCTGCTAGATTCGGCTACTGAAGTGTTTCagcttgttttattatatagcGTTTTACTTACATTGCGAAATTTGTATTTCGTAAACTACATGAAGCAAAGTAAGCTTTATTCTTCTAAAGTTGTAGAATCATTACAGATAGCCTTGTATACATGTTATTATATGCTATCAGACCAAATATCGCAAGTGTAATTTCATAAGTTTCTTATTAGACTGGATGAATGAATAATGCAGATATGAGACCTCAGATTAGATGACAAGTCCCTTTAATTAACTGATTTGTATATCAGGGGTTCTTaacctttaataataatttgtttctgATGTTTTATGTAACACATCTAACATTTTCTCTTCCTAACACCAAACAGGCTGCAGTgatttttcagctgttttttgcACTGACCTTTTTCGTCTTTGAACactgtataatatttactttatgaCTCGCATTGCAAATGATGAGTGctaatataactatattttaacCCCAAATCGTTTATGAAAAATACAGGCTGGAGGCGTTTTAAATTTAGTTCTCTGCATTACTGTCTGGGTGTGTTTACTTGCAGATGCCTCCAGTATCACCTGCTTTGTCCCAAGATGTGTgatgattttcttttctgttgaaTAATGTTTGTCAGAAAATTTACCTCATGTAAGGATTGCATTGGCGTTGTTTTCGAATAAATTGTCTAAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234841 lncRNA upstream 820 17420722 ~ 17422300 (+) True G158573
TU234847 lncRNA upstream 2477 17420026 ~ 17420643 (+) True G158579
TU234835 lncRNA upstream 18080 17358364 ~ 17405040 (+) True G158569
TU234810 lncRNA upstream 112328 17308713 ~ 17310792 (+) True G158550
TU234793 lncRNA upstream 126662 17294071 ~ 17296458 (+) True G158543
TU234849 lncRNA downstream 110 17426743 ~ 17428031 (+) False snrpg
TU235029 lncRNA downstream 383952 17810585 ~ 17810812 (+) True G158726
TU235031 lncRNA downstream 384436 17811069 ~ 17856534 (+) True camk2n1b
TU235030 lncRNA downstream 425613 17852246 ~ 17856534 (+) False camk2n1b
TU235067 lncRNA downstream 495937 17922570 ~ 17923679 (+) True G158754
XM_043224253.1 mRNA upstream 6465 17405458 ~ 17416655 (+) True cs
XM_043225444.1 mRNA upstream 20272 17362363 ~ 17402848 (+) False LOC122329248
XM_043225443.1 mRNA upstream 20272 17362365 ~ 17402848 (+) True LOC122329248
XM_043225445.1 mRNA upstream 20272 17362385 ~ 17402848 (+) False LOC122329248
XM_043225032.1 mRNA upstream 68710 17349249 ~ 17354410 (+) True si:ch211-210c8.6
XM_043225428.1 mRNA downstream 100 17426733 ~ 17428029 (+) True snrpg
XM_043225106.1 mRNA downstream 1824 17428457 ~ 17432713 (+) True LOC122328977
XM_043225294.1 mRNA downstream 11884 17438517 ~ 17444127 (+) True fam50a
XM_043225292.1 mRNA downstream 17889 17444522 ~ 17452097 (+) True si:ch211-207e14.4
XM_043225293.1 mRNA downstream 17892 17444525 ~ 17452096 (+) False si:ch211-207e14.4
TU234757 other upstream 251281 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 340465 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 340561 17082205 ~ 17082559 (+) False G158524
TU234708 other upstream 691221 16731346 ~ 16731899 (+) True G158486
TU234659 other upstream 758806 16621198 ~ 16664314 (+) True G158446
TU235116 other downstream 630481 18057114 ~ 18058917 (+) True G158789
TU235541 other downstream 1345317 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 1374251 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile