RNA id: TU234860



Basic Information


Item Value
RNA id TU234860
length 346
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G158587
representative False

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17082207 ~ 17082684 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aaggggaaaagtgtccaaataaaagggggatctggtgtcctcgtcgtgctccgggtaacgtgcaggtttaggccgtgttccagggggggaagggtccaggtaaggggcggagtccggcggtcgcacgcgctcccctttttctggcccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgtttctttgctccggcggcagagtgggatgagctgtgtgctcacagcctggactacgggggtcccacgacgcacttctcggacggcggggtgaggtccatcgcgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234706 lncRNA downstream 353864 16728101 ~ 16728343 (-) True G158484
TU234705 lncRNA downstream 354492 16727438 ~ 16727715 (-) True G158483
TU234703 lncRNA downstream 357804 16723931 ~ 16724403 (-) True G158481
TU234682 lncRNA downstream 474247 16607461 ~ 16607960 (-) True G158462
TU234642 lncRNA downstream 528812 16553043 ~ 16553395 (-) True G158432
TU234874 lncRNA upstream 70273 17152825 ~ 17225569 (-) True G158591
TU234890 lncRNA upstream 207419 17289971 ~ 17291543 (-) True G158605
TU234898 lncRNA upstream 228776 17311328 ~ 17338919 (-) False G158608
TU234897 lncRNA upstream 251292 17333844 ~ 17335245 (-) True G158608
TU234920 lncRNA upstream 300790 17383342 ~ 17386554 (-) True G158628
XM_043225103.1 mRNA downstream 74921 16832085 ~ 17007286 (-) True plxna2
XM_043225251.1 mRNA downstream 400519 16680306 ~ 16681688 (-) True LOC122329053
XM_043225250.1 mRNA downstream 404840 16674237 ~ 16677367 (-) True LOC122329052
XM_043224317.1 mRNA downstream 465868 16609478 ~ 16616339 (-) True LOC122328572
XM_043224027.1 mRNA downstream 536519 16541514 ~ 16545688 (-) True LOC122328366
XM_043225098.1 mRNA upstream 88561 17171113 ~ 17176489 (-) True hrct1
XM_043225099.1 mRNA upstream 88561 17171113 ~ 17175579 (-) False hrct1
XM_043225101.1 mRNA upstream 94073 17176625 ~ 17184385 (-) False slc48a1a
XM_043225100.1 mRNA upstream 94073 17176625 ~ 17179832 (-) True slc48a1a
XM_043225102.1 mRNA upstream 132047 17214599 ~ 17258164 (-) True itga5
TU234495 other downstream 723502 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 838812 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 912373 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 1073292 16008106 ~ 16008915 (-) True G158231
TU234274 other downstream 1364957 15699269 ~ 15717250 (-) False LOC122329227
TU234864 other upstream 94100 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 256715 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 963386 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1149091 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1664839 18747391 ~ 18754712 (-) True G159076

Expression Profile