RNA id: TU235009



Basic Information


Item Value
RNA id TU235009
length 292
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G158706
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17746530 ~ 17748502 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGGAAGTCAAACATGTATTTAATGGCGAGAGGGAGGGCACTGCCACGTGAGCCGTGCTGAATATCGTCTCAAACAAATCATCGACAAATTTCTGTAAAGTACCCTTGGTGGCCAGCAGTCGTGTCAGGTAGATCTCTGACACCATCTTGCTCCCGCGATCTCCCTCTCGTTGGTCTGCATGGTCGTGGTTTTTGACAAGGTGCCAGAGTTTGGTACCGCTCTCTAGATCGGGTGTGATCATGGGCGTCCTGGACCGCAGACTGTCTGGGCTGCTGGCCGTCCTCAACATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234910 lncRNA downstream 324225 17413703 ~ 17422305 (-) False coq10a
TU234925 lncRNA downstream 351108 17394021 ~ 17395422 (-) True G158632
TU234920 lncRNA downstream 359976 17383342 ~ 17386554 (-) True G158628
TU234898 lncRNA downstream 407611 17311328 ~ 17338919 (-) False G158608
TU234897 lncRNA downstream 411285 17333844 ~ 17335245 (-) True G158608
XR_006247788.1 lncRNA upstream 51340 17799842 ~ 17844102 (-) True LOC122328377
TU235093 lncRNA upstream 195423 17943925 ~ 17944160 (-) True G158774
TU235252 lncRNA upstream 251331 17999833 ~ 18001690 (-) True G158887
TU235259 lncRNA upstream 263624 18012126 ~ 18015877 (-) True G158892
TU235247 lncRNA upstream 293408 18041910 ~ 18043476 (-) True G158882
XM_043225107.1 mRNA downstream 308517 17433732 ~ 17438013 (-) True tmed4
XM_043224254.1 mRNA downstream 324013 17417622 ~ 17422517 (-) True coq10a
XM_043225030.1 mRNA downstream 385146 17354147 ~ 17361384 (-) True racgap1
XM_043225031.1 mRNA downstream 395582 17344102 ~ 17350948 (-) True bin2a
XM_043225290.1 mRNA downstream 415643 17316628 ~ 17330887 (-) False pou6f1
XM_043225104.1 mRNA upstream 24903 17773405 ~ 17777920 (-) True LOC122328974
XM_043225105.1 mRNA upstream 29972 17778474 ~ 17784124 (-) True pink1
XM_043224320.1 mRNA upstream 36213 17784715 ~ 17786242 (-) True LOC122328575
XM_043224107.1 mRNA upstream 39095 17787597 ~ 17788930 (-) True LOC122328417
XM_043224106.1 mRNA upstream 40478 17788980 ~ 17796430 (-) True LOC122328416
TU234899 other downstream 403145 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 566751 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1387825 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1503135 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1576696 16143833 ~ 16169834 (-) True G158288
TU235255 other upstream 297436 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 483141 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 998889 18747391 ~ 18754712 (-) True G159076

Expression Profile