RNA id: TU235227


Basic Information

Item Value
RNA id TU235227
length 600
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G158866
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18565276 ~ 18569950 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAATGACTTACCAATTTGCGAATTCTGTCCAAAACAAGATCAATGAGTTCTTTTCCAATAGTGTAGTGACCACGGGCATAGTTATTGGCAGCATCTTCCTTTCCAGTGATGAGCTGTTCAGGGTGGAACAGCTGACGGTATGTACCAGTGCGCACCTCATCTGCACAGACAGCCAGCATTTAGTGACCGGAGCACTATGACATACACAGTTATCATAACCTAAATTAAATCCACTTCTCTTACCAATGACAGTGGGCTCCAGGTCTACAAACACAGCCCTGGGGACGTGCTTTCCAGCTCCGGTCTCACTGAAGAAGGTGTTGAAGGAGTCATCACCTCCTCCAATAGTCTTGTCACTGGGCATCTGTCCATCCGGCTGGATGCCATGCTCAAGACAATAGAGTTCCCAGCAGGCATTGCCGATCTGGACTCCAGCTTGACCAACGTGGATAGAGATGCACTCACGCTGTGAAGAAAATGGCAAAGGTTATAAgtcatataaaacaaatatcacTGCGCTATATAAATTCTACTCACTTGTAAAGCTTTAGCATATCAAGCTTTATTTCACCCAACAATTAAACTTCTTAACTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235245 lncRNA upstream 19786 18544910 ~ 18545490 (+) True G158880
TU235174 lncRNA upstream 208742 18296006 ~ 18356534 (+) True G158830
TU235172 lncRNA upstream 291784 18273226 ~ 18273492 (+) True G158828
TU235171 lncRNA upstream 292433 18272329 ~ 18272843 (+) True G158827
XR_006247883.1 lncRNA upstream 293349 18250591 ~ 18271927 (+) True LOC122329094
TU235422 lncRNA downstream 30952 18600902 ~ 18601176 (+) True G159002
XR_006247880.1 lncRNA downstream 51876 18621826 ~ 18623979 (+) True LOC122329080
TU235436 lncRNA downstream 71544 18641494 ~ 18641890 (+) False fam110c
TU235441 lncRNA downstream 83446 18653396 ~ 18655822 (+) True G159018
TU235468 lncRNA downstream 168811 18738761 ~ 18738995 (+) True G159034
XM_043224445.1 mRNA upstream 2134 18547229 ~ 18563142 (+) True jph2
XM_043225345.1 mRNA upstream 30182 18532917 ~ 18535094 (+) False mfsd5
XM_043225344.1 mRNA upstream 30182 18532919 ~ 18535094 (+) True mfsd5
XM_043225552.1 mRNA upstream 33774 18516604 ~ 18531502 (+) True nr1d4a
XM_043224423.1 mRNA upstream 113390 18437059 ~ 18451886 (+) True calcoco1a
XM_043224451.1 mRNA downstream 5248 18575198 ~ 18578740 (+) True LOC122328644
XM_043224112.1 mRNA downstream 23784 18593734 ~ 18595684 (+) True tmem18
XM_043224068.1 mRNA downstream 71551 18641501 ~ 18644692 (+) True fam110c
XM_043225437.1 mRNA downstream 76247 18646197 ~ 18653191 (+) True fbxo25
XM_043225438.1 mRNA downstream 76247 18646197 ~ 18653191 (+) False fbxo25
TU235116 other upstream 506359 18057114 ~ 18058917 (+) True G158789
TU234842 other upstream 1141321 17423134 ~ 17423955 (+) False si:ch211-148l7.4
TU234757 other upstream 1393437 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 1482621 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 1482717 17082205 ~ 17082559 (+) False G158524
TU235541 other downstream 202000 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 230934 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00008665 True 657 mRNA 0.58 5 CM030126.1 8276771 ~ 8293517 (+)