RNA id: TU235245


Basic Information

Item Value
RNA id TU235245
length 455
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G158880
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18544910 ~ 18545490 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAAGCAACACACAACTCTACAACGACAGCCTCAAACCCGTCATAAACCGCTGCATCTGCTATTTATTTGCTCCCAAATGCATCTGATAGGCACTATGCATGCATCTGATCGATGGTGTTGGGCTGCAGTAGACTTGAAGCTAGTCAAGTCAAAATGTTCCATCTTCTGCTGAGGTTTCGTAATGTCTTCATAAAGGACGCAACAGAACAGACAGCTGAAGGACTGAGTCCAGTGGTACAGAACGAGCCTGTCTTTGGAGTATGGCTTGTGTTCTATCGTGGGCTCGTGACTCTCCTCTCCGTCTGTGATTTTGCCATCTTCGTCCATGGCTGATATGGGCCACCAGCTACAGTTGGTGGGAGTAACATTGTTGGAAGACGCCATGACAGAGGATtttgtgcgtgtgagagaggagcagagagagagagagagagagggagggataGAGAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235174 lncRNA upstream 188376 18296006 ~ 18356534 (+) True G158830
TU235172 lncRNA upstream 271418 18273226 ~ 18273492 (+) True G158828
TU235171 lncRNA upstream 272067 18272329 ~ 18272843 (+) True G158827
XR_006247883.1 lncRNA upstream 272983 18250591 ~ 18271927 (+) True LOC122329094
TU235170 lncRNA upstream 273006 18271662 ~ 18271904 (+) False LOC122329094
TU235227 lncRNA downstream 19786 18565276 ~ 18569950 (+) True G158866
TU235422 lncRNA downstream 55412 18600902 ~ 18601176 (+) True G159002
XR_006247880.1 lncRNA downstream 76336 18621826 ~ 18623979 (+) True LOC122329080
TU235436 lncRNA downstream 96004 18641494 ~ 18641890 (+) False fam110c
TU235441 lncRNA downstream 107906 18653396 ~ 18655822 (+) True G159018
XM_043225345.1 mRNA upstream 9816 18532917 ~ 18535094 (+) False mfsd5
XM_043225344.1 mRNA upstream 9816 18532919 ~ 18535094 (+) True mfsd5
XM_043225552.1 mRNA upstream 13408 18516604 ~ 18531502 (+) True nr1d4a
XM_043224423.1 mRNA upstream 93024 18437059 ~ 18451886 (+) True calcoco1a
XM_043224587.1 mRNA upstream 301207 18235688 ~ 18243703 (+) True cbx5
XM_043224445.1 mRNA downstream 1739 18547229 ~ 18563142 (+) True jph2
XM_043224451.1 mRNA downstream 29708 18575198 ~ 18578740 (+) True LOC122328644
XM_043224112.1 mRNA downstream 48244 18593734 ~ 18595684 (+) True tmem18
XM_043224068.1 mRNA downstream 96011 18641501 ~ 18644692 (+) True fam110c
XM_043225437.1 mRNA downstream 100707 18646197 ~ 18653191 (+) True fbxo25
TU235116 other upstream 485993 18057114 ~ 18058917 (+) True G158789
TU234842 other upstream 1120955 17423134 ~ 17423955 (+) False si:ch211-148l7.4
TU234757 other upstream 1373071 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 1462255 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 1462351 17082205 ~ 17082559 (+) False G158524
TU235541 other downstream 226460 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 255394 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile