RNA id: TU235422


Basic Information

Item Value
RNA id TU235422
length 275
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G159002
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18600902 ~ 18601176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTTGGGAACGACAGCCACAAAGCGGTAGGCTACGTGGCTTGAGGTCAGTGGATGCTGAAGCGCATAGCGCAAAGGGGTCGCCAACTTTCTGCAGTCAGTagctacagacctccaaacttcatgtggccttcggattagctcaagaacagggtgcagagagcttcatggaatgggtttccatggccgagcagctgcatccaagccatacatcaccaagtgcaatgcaaagcgtcAGATccagtggtgtaaagcacgcCACAACTGGACTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235227 lncRNA upstream 30952 18565276 ~ 18569950 (+) True G158866
TU235245 lncRNA upstream 55412 18544910 ~ 18545490 (+) True G158880
TU235174 lncRNA upstream 244368 18296006 ~ 18356534 (+) True G158830
TU235172 lncRNA upstream 327410 18273226 ~ 18273492 (+) True G158828
TU235171 lncRNA upstream 328059 18272329 ~ 18272843 (+) True G158827
XR_006247880.1 lncRNA downstream 20650 18621826 ~ 18623979 (+) True LOC122329080
TU235436 lncRNA downstream 40318 18641494 ~ 18641890 (+) False fam110c
TU235441 lncRNA downstream 52220 18653396 ~ 18655822 (+) True G159018
TU235468 lncRNA downstream 137585 18738761 ~ 18738995 (+) True G159034
XR_006247885.1 lncRNA downstream 155109 18756285 ~ 18763992 (+) True LOC122329216
XM_043224112.1 mRNA upstream 5218 18593734 ~ 18595684 (+) True tmem18
XM_043224451.1 mRNA upstream 22162 18575198 ~ 18578740 (+) True LOC122328644
XM_043224445.1 mRNA upstream 37760 18547229 ~ 18563142 (+) True jph2
XM_043225345.1 mRNA upstream 65808 18532917 ~ 18535094 (+) False mfsd5
XM_043225344.1 mRNA upstream 65808 18532919 ~ 18535094 (+) True mfsd5
XM_043224068.1 mRNA downstream 40325 18641501 ~ 18644692 (+) True fam110c
XM_043225437.1 mRNA downstream 45021 18646197 ~ 18653191 (+) True fbxo25
XM_043225438.1 mRNA downstream 45021 18646197 ~ 18653191 (+) False fbxo25
XM_043225175.1 mRNA downstream 73438 18674614 ~ 18689276 (+) True cmtr1
XM_043224183.1 mRNA downstream 90845 18692021 ~ 18729675 (+) True cpne9
TU235116 other upstream 541985 18057114 ~ 18058917 (+) True G158789
TU234842 other upstream 1176947 17423134 ~ 17423955 (+) False si:ch211-148l7.4
TU234757 other upstream 1429063 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 1518247 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 1518343 17082205 ~ 17082559 (+) False G158524
TU235541 other downstream 170774 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 199708 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile