RNA id: TU235436


Basic Information

Item Value
RNA id TU235436
length 397
lncRNA type sense_over
GC content 0.35
exon number 1
gene id fam110c
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18641494 ~ 18644692 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttattgctttgtttgacaCTACAAACTCGCACACAGCGAGAAATATTGAATCGGGACACACAATGCATAAACATATGTTGAGAAAGAACCAGGTCAggaatgaaatcattttaaaaggacATCGGTTCTTACAAAATAACAGCTGGAACTggatttttgacattttagaaatattacctgtatttaaaaagtttgacTATAAACCCAGCCTCCCTTAAATCAATAGTTCACCccaacatttgtttttcttttttaaatgattgaccGCAGGCCTCGATGATTTGAGCACACGCCTCAGCGTTTTAGTAcaaaacatttgacatttatttcgTGTAAATTTCACCAGTGCAGAACTTCAATCAAAGAGGCCAAAGAACAATCAGTTccaaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247880.1 lncRNA upstream 17515 18621826 ~ 18623979 (+) True LOC122329080
TU235422 lncRNA upstream 40318 18600902 ~ 18601176 (+) True G159002
TU235227 lncRNA upstream 71544 18565276 ~ 18569950 (+) True G158866
TU235245 lncRNA upstream 96004 18544910 ~ 18545490 (+) True G158880
TU235174 lncRNA upstream 284960 18296006 ~ 18356534 (+) True G158830
TU235441 lncRNA downstream 11506 18653396 ~ 18655822 (+) True G159018
TU235468 lncRNA downstream 96871 18738761 ~ 18738995 (+) True G159034
XR_006247885.1 lncRNA downstream 114395 18756285 ~ 18763992 (+) True LOC122329216
XR_006247886.1 lncRNA downstream 114395 18756285 ~ 18758744 (+) False LOC122329216
TU235569 lncRNA downstream 334533 18976423 ~ 18989619 (+) True G159107
XM_043224112.1 mRNA upstream 45810 18593734 ~ 18595684 (+) True tmem18
XM_043224451.1 mRNA upstream 62754 18575198 ~ 18578740 (+) True LOC122328644
XM_043224445.1 mRNA upstream 78352 18547229 ~ 18563142 (+) True jph2
XM_043225345.1 mRNA upstream 106400 18532917 ~ 18535094 (+) False mfsd5
XM_043225437.1 mRNA downstream 4307 18646197 ~ 18653191 (+) True fbxo25
XM_043225438.1 mRNA downstream 4307 18646197 ~ 18653191 (+) False fbxo25
XM_043225175.1 mRNA downstream 32724 18674614 ~ 18689276 (+) True cmtr1
XM_043224183.1 mRNA downstream 50131 18692021 ~ 18729675 (+) True cpne9
XM_043224184.1 mRNA downstream 103132 18745022 ~ 18754478 (+) True klf15
TU235116 other upstream 582577 18057114 ~ 18058917 (+) True G158789
TU234842 other upstream 1217539 17423134 ~ 17423955 (+) False si:ch211-148l7.4
TU234757 other upstream 1469655 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 1558839 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 1558935 17082205 ~ 17082559 (+) False G158524
TU235541 other downstream 130060 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 158994 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile