RNA id: TU235468


Basic Information

Item Value
RNA id TU235468
length 235
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G159034
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18738761 ~ 18738995 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAATAATCACCAAAAAATAAAGGTATGTTGGGAATTGTATTTTCAAGTGTTGCTCTCTATTACACTCTATTATTAATAGACTATTAACAACGGTGATACAAATCTTAACTAATTGACaaagtgtgtttttcagttGATAATGGTTAAGTTACTGGCTTGTTTTTGACAAAGTAAGTTAGACATAGACTTACTatcaattaaatgatttaagatgTTTTAGACAATTCATCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235441 lncRNA upstream 82939 18653396 ~ 18655822 (+) True G159018
TU235436 lncRNA upstream 96871 18641494 ~ 18641890 (+) False fam110c
XR_006247880.1 lncRNA upstream 114782 18621826 ~ 18623979 (+) True LOC122329080
TU235422 lncRNA upstream 137585 18600902 ~ 18601176 (+) True G159002
TU235227 lncRNA upstream 168811 18565276 ~ 18569950 (+) True G158866
XR_006247885.1 lncRNA downstream 17290 18756285 ~ 18763992 (+) True LOC122329216
XR_006247886.1 lncRNA downstream 17290 18756285 ~ 18758744 (+) False LOC122329216
TU235569 lncRNA downstream 237428 18976423 ~ 18989619 (+) True G159107
XM_043224183.1 mRNA upstream 9086 18692021 ~ 18729675 (+) True cpne9
XM_043225175.1 mRNA upstream 49485 18674614 ~ 18689276 (+) True cmtr1
XM_043225437.1 mRNA upstream 85570 18646197 ~ 18653191 (+) True fbxo25
XM_043225438.1 mRNA upstream 85570 18646197 ~ 18653191 (+) False fbxo25
XM_043224068.1 mRNA upstream 94069 18641501 ~ 18644692 (+) True fam110c
XM_043224184.1 mRNA downstream 6027 18745022 ~ 18754478 (+) True klf15
XM_043224663.1 mRNA downstream 60577 18799572 ~ 18814653 (+) False LOC122328754
XM_043224662.1 mRNA downstream 61889 18800884 ~ 18814653 (+) False LOC122328754
XM_043224664.1 mRNA downstream 65311 18804306 ~ 18814653 (+) True LOC122328754
TU235116 other upstream 679844 18057114 ~ 18058917 (+) True G158789
TU234842 other upstream 1314806 17423134 ~ 17423955 (+) False si:ch211-148l7.4
TU234757 other upstream 1566922 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 1656106 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 1656202 17082205 ~ 17082559 (+) False G158524
TU235541 other downstream 32955 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 61889 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile