RNA id: XM_043223963.1


Basic Information

Item Value
RNA id XM_043223963.1
length 2055
RNA type mRNA
GC content 0.45
exon number 5
gene id ccn5
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14642391 ~ 14646962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atccAGGTCCAGCCACTGTTTACCCTGCAGTCAGGCTATGACATCAGAGCGAGGACTTTATAAAAGTGCATGTGCGCGGAGCCAGGCAGTGAGAAAACAGTAACACAAGTAGAAAATCTCATTGTGGTGGAACACATAGCAGAACATGATGGACAAcatacagagagacagaaaaaaccTTATGGCGTGGGCACTTCTGTTTTACCTGGGCTCACAGGTGTGCTGTCAGCAGTGTGGGGGCCCTTGTCAGTGCCAAAGCTCAGTGCCAGCCTGCCCAGAAGGCGTTCCTCTCGTTCTTGATGGGTGCCAGTGCTGTCAGGTGTGTGCGCGGCAGCAGGGTGAGGCCTGCAGTGAGCTGTATCCGTGTGACAGTCAGCGCGGCCTGCAGTGTGACTATAGTGCCAGCTTCCCTGAAGAGCCAGGAGAGTGTGTCAGTCAGAAGGAGCTGGGCTGTGAGCACAATGGAGTCTCCTATCAGGAAGGCCAGGTATTTCAGCCCTCGTGCGCTCTTCAGTGTCACTGTTCAGGTGGAGGGGTGACCTGCGTGCCCCGCTGCAGTGAGGATGTTCTCCTGCCCACCCCAGACTGCCCTCATCCTCGAAGAGTTCAACAACCAGGAAAATGCTGTAAAGAGTGGGTGTGTGAAAATATGGACAACACAGTGCTTCAGGACGCTCACAGAGCTTCGGGAAGCGATCAGACAATGCCTGCAGACTCTGCATACCAAACCAGACCCGGTTTAAACTGCATAGACCAGAGCTCAGAGTGGAGCGCTTGCTCGCACACCTGCGGGCCTGGGATATCCACACGGGTGTCCAATCAAAACCCGGCCTGTCGTCTGGAGATGCAGATGCGCTTGTGTACGATCCGACCCTGTCAGCCTGTTCTCCAGAGAAACCCACAGTGGTCAAGGAGGAAATGTCAACCCAGCTACAGGTCAGCAACTCCAGTGAGGCTTTTCCACCAGGGCTGCTATAGTGCACAGTTCTACAGGCCCCGTTATTGTGGCTCTTGTAAGGACAAGCGTTGCTGTACTCCTTACCACACTGGCACGACTCTGGTCACTTTCCGCTGTCCTGGAGGAAGACAGCGCAAACATGCTGTCATGACCATAAACTCCTGCATCTGCCATTACAACTGCCCCTATTCATCTGGAACGGCATATAGAGGGACACCCTTCTGGGGTTAGAAGCTGACTCTCTTATAGGTTGACTTTGGATGTAGTAGCTTCATATCGGATGCTCTGAGTTTAAAAGGTGCTATTAcatgcacctaaatcaacatttgacaaaaaaagagCCCTAAAGAGCACATAAGCCATTTAAtaacaatgtttgttttttttcaggacaTTGTCTTAAGACGACAGGTGTCTGTGCTGGCATCTTTGGTGCaactaaaatagtttttgagtATAGGTTCTGCTAGAAATTTCTCTCTCTTGTTTCTATTTGGTTTACACAGTGGCAGCTGTTTTACTctgaaaaaaccccaaaaaactttACACTTGAAAAATATCCACAAATTCTGTATCTTTGTCAGTTTTGTGCTTATTGTTAGACAACTGCTGGCTGGAATTTTAAAGCTAGTAGCTcacaaaagatgaaaataatgtaaaatctaaatctaatggggttttttttttttaaaaaaaggcaaagaaaCGTCCCGACGTATTTGAAATTTACCCAAAATAACATTGCACATAAATGCAGGAGAATTGCTTATATGCTGTGTGAAATTAAgacagttacatttattatgtattttatagttAAATGTGGCATGCTCACCTGTAACGAAGGAAGGCTTTTATTTGAAGACTGACACTAACTGTATTTTAGTGTTTACCAATTTCAAGCAAAAGGCTTgactgtgtatatatgtaaatacttgtttatgtttgtatgtttgtcaTTAATAGCCTACAggaattgtaatatttgtgttcatttgaAATTTTGCACTGTCATTTACCACCTCACAACCTTGCAGTCAAAAGTTAACAGCATTTGTCAGACCTTAtgcaaacagattttaaaaatctcaGTAAGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233377 lncRNA upstream 5574 14623815 ~ 14636817 (+) False pkig
TU233410 lncRNA upstream 6270 14631840 ~ 14636121 (+) True G157626
TU233407 lncRNA upstream 13193 14627590 ~ 14629198 (+) True G157624
TU233375 lncRNA upstream 18663 14603793 ~ 14623728 (+) True pkig
TU233373 lncRNA upstream 18663 14604018 ~ 14623728 (+) False pkig
TU233380 lncRNA downstream 25182 14672144 ~ 15153978 (+) False itih6
TU233426 lncRNA downstream 29774 14676736 ~ 15158751 (+) True G157630
TU233434 lncRNA downstream 52978 14699940 ~ 14702175 (+) False G157633
TU233435 lncRNA downstream 52978 14699940 ~ 15181831 (+) True G157633
TU233436 lncRNA downstream 55481 14702443 ~ 14702869 (+) True G157634
XM_043224566.1 mRNA upstream 18660 14604009 ~ 14623731 (+) False pkig
XM_043224567.1 mRNA upstream 18660 14607928 ~ 14623731 (+) False pkig
XM_043224023.1 mRNA upstream 38738 14600155 ~ 14603653 (+) False ttpal
XM_043224022.1 mRNA upstream 38738 14600227 ~ 14603653 (+) True ttpal
XM_043224256.1 mRNA upstream 44056 14581032 ~ 14598335 (+) True hnf4a
XM_043223964.1 mRNA downstream 145 14647107 ~ 14649232 (+) True si:dkey-78k11.9
XM_043224379.1 mRNA downstream 2818 14649780 ~ 14659932 (+) True pfkfb1
XM_043224378.1 mRNA downstream 6531 14653493 ~ 14659932 (+) False pfkfb1
XM_043224380.1 mRNA downstream 7966 14654928 ~ 14659932 (+) False pfkfb1
XM_043224377.1 mRNA downstream 12417 14659379 ~ 14673186 (+) True itih6
XR_006247782.1 other upstream 299117 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 585570 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 587891 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3123855 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 3126520 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233368 other downstream 37028 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 65185 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 89039 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 345388 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 653742 15300704 ~ 15304550 (+) True G157620

Expression Profile