RNA id: XM_043223981.1


Basic Information

Item Value
RNA id XM_043223981.1
length 4494
RNA type mRNA
GC content 0.46
exon number 19
gene id plekhm2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13869388 ~ 13881718 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGGCCTGTGAACACAAGCGCGAGTCGAGAGCGCGCGTCAGCTGACATCCGCAGAGAGATCACAGGCAGACATGGATCAACTCAAAGTCAAAGACAGGATCCTCGAAAACATCTCTCTCTCCGTCAAGAAGTTGCAGAGTTACTTTGCCGCCTGTGAGGATGAGACGCCAGCCATCAGGAATCACGACCGGGTTCTTCAGCGGCTTTGTGAACACCTGGATCATGCTCTGCTTTATGGGCTGCAGGACATCTCATCGGGTTACTGGGTACTCGTGTTACACTTCACACGACGAGAGGCCGTACGTCAGATTGATGAGCTTCAGCACATAGCTACCAATCTTGGCAGAAGTCGTGCCTGGCTCTACTTGGCCCTCAGTGAAAGTTCTTTAGAAAGCTACCTCCGACTTTTTCAAGAGAATCAAGGACTGCTCCAGAAATACTATTACAAAAATGCACTGGTTTGCAGTCATGACCATCTCACTCTGTTTCTTACACTTGTCTCTGGGCTGGAATTCATTCGCTTTGACCTCGAATTGGATGTGCCATATCTGGATGTTGCTCCTTACATGCCAGAATACTACAAACCCCAGAATCTTTTGGATTTTGAGGAGAGGTTGCCAAGCTCTGATAGCCTGTCTCTGCACTCTTTCACATCCCTCACCTCCACTAACCTTGAGTGGGACGACAGCGCTATTGCTCCATCCAGTGAAGAGGGAGATTTGACCGATCCAGTCAGTGGTCCCCGCTCCTCAGGATCAGACCCTCAGACTGTTGTCAGTGATTGTGTTGTAGTGAGGGCCTCTGCAGGTACCATAAGAACCACATCTCTGTCACGAAGCCCTACATTTCGGCACAATCCCTTCAACGAGGACTCGGACACTAACACTTCAGCTGACGTCACCCCAGTGCACATGGCAAGCCGTCATGCTTCAACAACAGAGGATTCTGAGATCACCAACACTGAGCTGGAAGTCATTAGAATGGCAAGGCGCAGAAGGCCTGGTAAGAAACGACGGGGAAGAGGGTCGACAGACTCTGTGAGCAGCGAACAGAATGTCATCTCTTCAGAAATGGCTGACACTGAGGAATGTCTTAAGATTGTAGTTGAGAGAGACATTGTAGTTGATAACATTAATATAGACAGTCGGGGTTCTCTGGAGGGGTCTAATGGTCCTGGCTCAGAGTCTGTGAGGAATGGGAGACCAGAAGGAGAAGATGAAGACCCGGAGGCAGGGCTGAGGCTTCCTGAAATGACGGACACTTCTATGGACAGTGTGGGCGAACCGCTGCGTGACGTCATGGATAGGCTGAACGGCTCTCTGGATGGGAAGCCCTGGCAGCGGAGTGAAGGTGAGGAGGGAGAGGATGGTACTTCCACTAGTCATGATGGACCACCCCATCAGCGGCCCTTTCGAGAGGACTCGGGCGGTGAACCTCCGGACCCAAGTCGTAGCTTCCTGCAGGCCCCCCTCCCACCTGCGGACTTCTACTGCTTTACCTCCCAGAGTCCAGACCCTGCTGCCTCGAGTGGTGGGCACAATGACTTTGCAGGGAATGGCGAGTCGCAGGATGTTCCTGTTGGCGATGAAGATGAGGGAGAAGCAGAGAGACCAGCTACAGGGCAGGATCCCTCCATCCCCGTAGAGACGTCAGCTCAGGAACTGAGTAAAGAAGAAAAGCAGCAGGAGGAAGAAAAAGACTATGCAGTACAATGCTCCCATGCTGCAGAGTTTAAGGTGGATAACAATCACCTTTTGCTGCTCATGATTCACGTTTTCAGGGAGAATGAAGAACAGCTCTTTAAGATGGTGAGAATGAGCACAGGCCATATGGAAGGAGATTTGCAGCCTCTGTATCTGCTGTTGACGGACTGCTACATTTACCTCTTGCGAAAAGgggCAGCGGAGAAGCCTTATAGTGTTGAGGAGGCGGTGTCTTATAACGAGCTAGACTACATCTCTGTTGGACTTCACCAGCAGACTATCACTCTGGTGTGCACTAACAGAAGACGGCAGTTCCTTTTGGACACAGCCGACTCATCTCTGACCGTCTGGTTTCTGACTGTGCTGAAGGCGGCCTTGGAAAATGGCTGTAGGGAGCCTCCCTACCCCTCTGTTCTCACTGACGCCACCATGGAGAAACTGGCTCTTTCTAAGTTTGTATGCCAAGAGACTCAGTGTGAGTTATCTGAGATGAGCATCCGCCTGTATTCTCTGGTTCACTGGGAGGACCCAATGGATGCAGCAGTAGCTTCACCAACATCTCCGTCCTGCGCCAGAGGATCCAGTAGCACTAAAGAGGGGGCACTGTTGTACCGTGCTGGGAGCACTTATTTGGGGAAGGAAGTATGGAAAAGCTGTTACTTGGTTCTCAGCAACGGCATCCTGTATCAGTATGCAGAGAGAACAGATGTTACACCTTTGATGTCTGTTACTATGGGgggAGGGCACTGTGGTGGTTGCAGGCGCTCAAACAGCTCAGAGAAGCCTCATGCTTTTCAAGTGATTCTAACAGAACATCCTCCATTAGAGCTCAGTGCAGAAAACGAACTGGAGATGGCAGAATGGATGCAGCTGCTCTGCCAGTCTGTTTCTAAAGGGattATTCCACAGGGAGTAGCTCCTGCACCCTGTATTCCGTGTTGCCTTGTACTCACAGACAGGAAGTTGCTCACATGTCACCAGGATTGCCAGACCATTTTTTTCCGTTCTCTAGGAGGAGCTGATCTGAACGATGTGACAGCTGTTTGTCTGGAAGAGGATAAAGAATACTGTGTCATTGAATTTGCAGAGGATCGTGCTCAGTTTCTCCCCCCATGGGTTTTGTATTTCAGCGGATGTGAGGAGCGGGATCGGCTACTAGCAGAATTAAGTCAAGCTTGGGCTGTTGTTTACCAgGTAAGCCTCCCTCGTAAGCCGGTGTCTGACCCGTCGGTACAGAAGAGGTGTAGGGAAGCTCTGGAGCTGATGAAGAGTGCGTGGCAGAGGAGTGACAGCCTACACAGAGGTCGAGCGGAGAGAGAACCGTGGTGCTGACGACCCTTTCATCACCGCAGGCTCACCGGCCAACCTACTGTTTATGTAGGTACAAGCAGACTCTGTGAGCTCTCCTGACCAGAGACGATATTGAAAAAACATGGGCTCATATGATATTTATCTACAGATAATGAGGCCTGACTTTGTTTACACTTGCCTTGCACAAATATTTAAGGAGTAATGATTAAGGCTTTGGCTTTTACAAGTGGAAGTCCGCAACAGGAAATCAAAAAGACAGGTCTAGCAGTTCTCTTGTATTACACGTGATCAGACAATGCAGAGTGTAAATACATAGTGTAATAactcaaaagctttttttttttaaaaaaaacaaaacaaaaaccttttactCCTTGTACAAAGTCTATGGACAGATACTGTAAATGCCTGTACTATGTAAAGAGGTACAAACTGCTTTGTGAGCACTTGCGAAAGAGAATTTTAGTTATGTTTACACCTTTGGTATTAGCTGGCTGCtttgttaattatttgaaaGTAATGGTTTGCATGGCAGCTTGGCACAgacactcaaaacacacacacacacacacacacgcacagagaaAATGGGAAATTGGTCCAGGTTTAATTTAGACATCTAATATCAGTCAGCACTTCTAACAGTGATGGTACGGTACCAGCTTGTAATCACTGCTGTTATATTAGACTGAAATCATTTGTTAGGATCAGATGGCATTGAGATACTGTAATAGGGATGTACAATTCTAAAATATCATTACTAACTAAAATCACAGTTTAGAAGTGAAGGAGCTGATTACAGCAGAATTGCACAAGGTTCAGAATTGCACATTGAtcgttttgttttcttttttctttttttaattggcattaaaatgatttctgatcaTGCATAAGCATTCACaagtcaacttttttttctttttctagtCAATTGTTTAAGGTCCTCTtagcaatttttattatttttgttgttcttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtttttttttttattattttttgttttgtttttttaactctgATCAGCTGTGTTTTAACTCAAATATCAAATCCATTCCCAGTCCCTTACTCAGTGGTATAATGTACCATATCCAGCGATACACTGTAAAGTAGTTTTAAGAATGTAGAGTGGTTTTAAAGAAGGCGGACTTGAGTAATGTGGATCTGTGACAGACTGTGATAAATGGAAGCGGAATCTCAGGTATGTCGAAGTTTGTTCCAGTCAACAGTGATTTTAAACGATACATTGCTGGACAATGATGGAAGTTGTTTGTTAaatgtggtttttattttttgtttttaatttttgtttcttaatggGAGTGGCCTACAGTAGTCCATTATGTTGTTCTAACACTAATGTCTCAGATACACTAAATGCTGCATGTACATTTTGGAAGATGGCATAACATgataacaaatatgaataaaaatgactttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233703 lncRNA downstream 43799 13823993 ~ 13825589 (-) True G157826
TU233679 lncRNA downstream 96080 13772775 ~ 13773308 (-) True G157813
TU233665 lncRNA downstream 122217 13742257 ~ 13747171 (-) True G157799
TU233620 lncRNA downstream 433527 13433755 ~ 13435861 (-) True G157765
TU233023 lncRNA downstream 747362 13121813 ~ 13122026 (-) True G157365
TU233774 lncRNA upstream 176119 14057837 ~ 14075937 (-) True G157863
TU233788 lncRNA upstream 260221 14141939 ~ 14142168 (-) True G157874
TU233789 lncRNA upstream 261944 14143662 ~ 14143930 (-) True G157875
TU233765 lncRNA upstream 341091 14222809 ~ 14225394 (-) False zbtb48
TU233794 lncRNA upstream 354634 14236352 ~ 14237014 (-) True G157880
XM_043223984.1 mRNA downstream 819 13852466 ~ 13868569 (-) True ano11
XM_043223985.1 mRNA downstream 1495 13854273 ~ 13867893 (-) False ano11
XM_043223983.1 mRNA downstream 18349 13835056 ~ 13851039 (-) True arhgef19
XM_043224635.1 mRNA downstream 85646 13779025 ~ 13783742 (-) True LOC122328742
XM_043225556.1 mRNA downstream 373998 13493581 ~ 13495390 (-) True her9
XM_043225468.1 mRNA upstream 670 13882388 ~ 13886080 (-) True ddost
XM_043225055.1 mRNA upstream 5478 13887196 ~ 13897098 (-) True zbtb17
XM_043225056.1 mRNA upstream 5478 13887196 ~ 13895641 (-) False zbtb17
XM_043225057.1 mRNA upstream 16088 13897806 ~ 13901112 (-) True hspb7
XM_043225568.1 mRNA upstream 30837 13912555 ~ 13923481 (-) False fam131c
TU233040 other downstream 587061 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 651980 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 1944738 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2067756 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2123993 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 445248 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 699376 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1465699 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1817551 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1817551 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile