RNA id: XM_043223986.1


Basic Information

Item Value
RNA id XM_043223986.1
length 3596
RNA type mRNA
GC content 0.43
exon number 12
gene id ttll10
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13804114 ~ 13824537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAaattctgtctctcttctcaaaGAGGTTAAACAGGTAGCATCACCTCGAGCTCCAGACGAAGAGCGCCTTTGTGGAGACAAAGACTCACCTGATTTGCGACTCGTTCTTTTCTACGCCCAATGTCATCGTGTTGGGAATCCGGTTCCCCTTCTAAAGATGGTCTCCTTCCTGGCTTTCTGGTTGCAAAAATCTAAGGGCGTCGTTCAGCCGAAGACAGAAGAGAAGGACGTTCTTGTGAAGCGGCGTAATTGACGCAGTGTCTGATATCTAGTGGATCGGTTCGAGGACGGAACggatcTGGGCTGGTTGGAGGGGAGTGACTGTGATGTCATGTGAGAGCTGGGTTGAGCCCCGTCAGCACAGAGAAGAGCCAGGTGCTGGACAGAGACAGGACACACAGCATGTCCGTGGAGACTCACAGCAGACGATGGGCGACCAGGGCCAATCAGACGAGGAGCTGAATGCTGGGGTCCAGGTCACGGTGCAACAACATGCGAATGAAGCTGGAatggaggagaaggagaagaacaAGGAGACACAGAGAAGGAGGCGGGTCACTCACAGAGTTAAATATACAGATGGAGCCCTGccagCATCAGTGAGCATCTCAGTTGTTGAGAGGGACAGAGACAAGCGGACTGAAGATCCAAGGGGCCCTGGACCTTTCTTCTATTTTGGGGGAAGCAATGGGGCGTCCATAGTTGTATCATATTGTGAGAGTCGAGGCTGGCAGCGCATATATGACAAGACCAGGACGGACTACAAGCTGAAGTGGTGTGAAACTAAATCACCTGCAGCCTACTACAGCTTCAGAGCAGGTGGCCAGTTGATTTACCAGATACCCAATAATAAGGTCCTGACCACTAAGATAGGCCTTCTGAACAGCCTGCGGGAGTATGACCGAGTCAGCAGCAAGGTCAACTATGGACGGGGAAACAGGAGGATGAGGCTGGAGAATTTTTTTCCTGTCACTTTTCGTATGGATATGAAAGATGAAAGACAGGCTTTCTTTAATGGAATATGTAATGATAAATCCAGCATGTGGATCTGCAAGCCGACAGGTCTTAACCAAGGCCGTGGTATTTTTCTACTACGGACACCAGAAGAAATAACCGCATTCAGAGAACGACTGCAGAACACAATAGAGCAACAGTCCAACAGGAAGTCACCTTTCAATGTGCCACAAGCTCGGATTGTTCAACAGTACATCCAGAATCCTTTGCTACTAAAAGGCCGGAAATTTGATGTGCGGTCATATTTTCTGATTGCTTGCACCTCGCCATACATGGTGTTTTTTCGTCATGGTTACATCCGACTGACATGTAACCTTTACGACCCAAACTCAGACAACATCACAGCCCACCTGACCAATCAATacatgcaaaagaaaaatcCTCTCTACAGTCTGCTAAAAGAGGAGACCGTTTGGTCCATGGAGCGCTTCAATGCATACATCAATGAGACGTACATGCTGCAGAAGGGACTGCCTAAAGATTGGGCTCTTGGTGCTTTTGCAAAAAGGATGCAACATATTATCATGCAGTGCTTTCAAGCTGTCAAAGCCAAGCTGGACTGCAAACTTGGTTACTTTGACCTAATTGGTTGTGACTTCTTGATTGATGAAGATTTCAAGGTCTGGTTGCTCGAGATGAATTGTAACCCTGCCCTGCACACTAACTGTGAAGTACTGAAAGATGTCATACCACAGACAGTCACCGAGGCACTTGACCTTACTTTGGAAATCTTCAGTAAGTCTTGCTGTGGACTAAAAATGCTGCCCCTAAACAGTCAAAGAGATTTTCTATTGCTGTATAGCAGTGAGACTGTGACCATAACCAAACAGAGACATAAAACCACCTGGCCCTTCTCAACACTTCACCCAAAGAGCAGCTCCACCCACATAAACACCAACAAAACCGCAGCCAATGCAACACAAACGGGGAAATCCACCAATAGAAccagaaaatattctgaaactCAAGCCAAATATCCGGTCTCTTCCACCaccgtcctctcctcctctacTTTATCCAATACCATCCCACCTTCACTGCAAACTGTGGGGTTACCCGTGAAAGAAACCCAGAAACTTCTGATATCTAAAGGTCAAGAAACAAATCAGCCTCGACCACGCCAGTCCAAACCCCTGCGTTCTCGTGTTGAGCTTCAGCTTAGCAAGTGCACCTGGCAACATCCTGCAGCGGTATCCAGTCTCACCGTGCCTCCACAACCGGTAAGAAGTGCTATCAGGTCATTGTCTACACCAGCTCTGAGCAAAGGCTCAAACTCCACACAAAGACTTGGAACTCAAGGTTCCCAGACAGACAAAATGAAGCAGATGAGCTGCAACCATACTCCCTTCACACTGTGGGGACAGAAAtgaaacagaacaaagaaaaggaACAGGAAGACAATGGATGACTGATGATAAAAATAGTCCAACTGTTGTTATAAGGGCTTTTTTCAGAATGTTGAATTTGTTTCCGTTTATgactaatgttttaattttattaagtttaacatgactttaaaaaagtatgttttactaataaacatatctgtatatttattattacctaGGCCACttatatatctaaataatatCTAGTTTCATACCGGATTCATACCTTTATAGGTAAGTAATGTCAGTATGCACATGGCAAAGCAAAAACTACTTTCAGAAATTAtgcattgcataagtattcatacccttagTACCTTTCGGCAGCATTTGGCAATTATCTGGCATTCCTATCCTCAACTCTTCAactctcaagctctgtcaggttggattGAAATTTTCACAGAGTTGTATATAAGCCACTCTTTCTGTGTGCTTAaagtcattgtcctgttggaaggTGAAGCTTCTGCCCAGTCTGAGcttctgaatgctctggactgggttTTCATTAATGCCATCTTAATATTTTGGTGCAGTGATCCTTTCTTCTACTCTGGCTTCAATACATttgcaaagatgttaaaaactgttttgtgtttttttgctttgccatTATCGTGTATTGGTTGTATATTgataaaaagtagttttaaagcAGTTCAACATAATGCAGCAACATAACAAATTGTGCAAAAAAGGAAGGGATACTGaatgaatacttttgcaaggcACTGAATGTATACCTCATACTCatgtatatctttttttataattattatttatttattcctgtggtggcagaattgaattttcagcagccattactacaGCCCCCTTGAGCAGTCAAGAAATCGTGCTAAATACTGATAAAAGTAACTATTATCAGTGCTTAAATCGGtcgtgctgcttcatattttatgtaaactgtgatactatgttttgttttgtttttcaggattctctgatgaatacaaagctcaaaagaacatttatacatggcacaaacacatttacttgaaataattTCTTTGTAACATTGTCATTTTGGTCAGTTCAGTGTGTcctttataaacatattttttttggtgGTAGGGGGAGGGTGTGAGATTATATCTTATCTTACATCtcacaatcaaataaaatgcttcTACTCGTCAtcatcaattatttatttttcaccaaaTTACCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233089 lncRNA upstream 308738 13493586 ~ 13495376 (+) True G157408
TU233085 lncRNA upstream 309637 13411670 ~ 13494477 (+) False G157408
TU233091 lncRNA upstream 362163 13438275 ~ 13441951 (+) True G157410
TU232971 lncRNA upstream 688940 13114958 ~ 13115174 (+) True G157329
TU232968 lncRNA upstream 697157 13106460 ~ 13106957 (+) True G157326
TU233118 lncRNA downstream 34428 13858965 ~ 13862206 (+) True G157423
TU233174 lncRNA downstream 73294 13897831 ~ 13901092 (+) True G157459
TU233151 lncRNA downstream 113906 13938443 ~ 13939354 (+) True G157446
TU233186 lncRNA downstream 114869 13939406 ~ 13939898 (+) True G157471
TU233187 lncRNA downstream 115741 13940278 ~ 13940490 (+) True G157472
XM_043224633.1 mRNA upstream 25440 13751746 ~ 13778674 (+) False ptpn11b
XM_043224632.1 mRNA upstream 25440 13758716 ~ 13778674 (+) True ptpn11b
XM_043224634.1 mRNA upstream 25440 13758820 ~ 13778674 (+) False ptpn11b
XM_043224211.1 mRNA upstream 56942 13538954 ~ 13747172 (+) False agrn
XM_043223991.1 mRNA downstream 422 13824959 ~ 13831445 (+) False LOC122328345
XM_043223990.1 mRNA downstream 430 13824967 ~ 13831445 (+) True LOC122328345
XM_043225565.1 mRNA downstream 80551 13905088 ~ 13911750 (+) True clcnk
XM_043224174.1 mRNA downstream 183683 14008220 ~ 14012879 (+) True szrd1
XM_043225021.1 mRNA downstream 220246 14044783 ~ 14050528 (+) True mlh3
unassigned_transcript_2622 other upstream 2285578 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2288243 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2290268 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2291416 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2627081 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 229827 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 232148 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 475164 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 859453 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 887610 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile