RNA id: XM_043223998.1


Basic Information

Item Value
RNA id XM_043223998.1
length 2974
RNA type mRNA
GC content 0.46
exon number 9
gene id cables2b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6838807 ~ 6857465 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCGGCGGCGGACGCGGTTTACTCGAGAATGGCGGCTGCTGCGTGCAGTACGCAGAGCACTCTGAACCCATGCGCTGGCAAGCTGCTCCGAGAGCACCTGCGGAAAAGTAAAGATTCGCGGAGGAGGCAAGCCGCGCTTTTGTTTCTCACTAATATATCCTTGGACGGTCGGCCAGTGCGGAACAATGTGAGCGCAGCGGGCCCGAGTGATGCCGAGTTTCAGTGCTCTGACATCGGTGCGACTGTGAACGAACTGTCCGCTGCGGCCAGTAGCGATGGGACCTTCTCCAGCCTCTCTGTGCCCAGACTCGGGCTGCTCGGCGTACCGCCCATCCTGGTCCTGCCGTCGGATTCTGGGTTTAGCAACCCCGGGAGCACCGAGATGTTCCTGGAGAGGGAGAGGGGCTCGTTCTCCTCGCAGAGCAACCTCCTGTCCCCCTGCAGTCTGCAGCCCACTCCGCTCGGAGCGCGGAAGTCTCCAACGCTGCTGTCGGTGCAGAGCTGCGGCTCCTCGCTGGAGTCTCGTCCGCGGAGTCGGAACGCATCTGGCTCTCCTCGTCCACGCTCCGTGAAGAAAGTCCACTTTATTAAGAACATGAGGCAGTATGATACCAGGGGCAGCAGGATCGTGCTTATCTGCGCCAAAAGGTCTTTGTGTGCCGCCTTCTCTGTGCTGCCTTATGGAGAGAGCTTCCACATCAGTGACCCTCGTCTGGATGCCCAGCGGCGGAGGCACTCATCTGGAGGAATATCCACCACCCTAGAGATGCTTCCCGGGCTAGAAGGGGTGGAACTGGGCATGTACGGCAGGACGGTGTCGTACGCTCAGTTCCTGTACCCAACTAACGCTCTGGACCGCCACAAGCCCGCAGTGGATCTCGCTCTACCCGTGCCCTATTCCAGAAACAGCATCCCTTGCAGTTATCCTCCCTCTCGCCTTAACAGCACCGTCGGCCTGGACCTGGGCCTTGAAGACATTGACTATGACCCTAATGTGCTCAGTGACCCACGGTGGCCATGTGGAAAACATAAAAGAGTGCTCATCTTTGCCTCATACATGACAACAGTAATAGAGTACGTCAAACCGTCAGATCTGAAAAAGGACATGAATGAGACCTTTAAGGAAAAGTTCCCCCACATCAAACTCACACTGAGCAAAATCAGAAGTTTGAAGAGAGAAATTCGTTCAGTAGGAGAGGAGTCTTCCTTGCAGCCGGTTACCATAGCCATGGCTTTTGTGTACTTTGAGAAGCTGGTCCTGCAGGGGCGTCTCAACAAGCAGAACAGGAAGCTGGTGGCAGCCGCGTGCCTACTGCTCGCCGCCAAGATCAGCAGCGACCTGAAGAAACAAGAGGTCAAGCAACTGATTGACAAACTGGAGGAGAGGTTCCGGATTAGCCGTCGAGAGCTGATCGCTTTTGAGTTCACCATCTTGGTGGCTCTGGAAATGGCGCTTTACCTACCGGAGAGCAAAGTCATGCCCCACTACCGCAAACTGGTGCAGCAGACCTGACGTGGGTCGAGCGGGAGGGCTCCGGGCCGTCGTGAATATGCAGATGAGATGCTTAAAGCAGTGGAAAGCGTGGGACAGTTTGAGGTATCGGAGCGAATGCACATCAACGCGGAGCTCTAAGGAAGAACCGACGTTTCCAAATGATGCTTTATATAGCAATCTGGCCAGCGGCTTTTCTTTTCATGGCTGTATGGTTTAGTGACCACCATGGGAATACTGCTGAGGAAAACAGCACGGGTCTTCTTTTATTGAAAGCAGAAGGTTTTAGCACTCAAACGACAAGGGAAGAGTTTAACTCCTGCTACTTCACTTGTGTGCATGCACGTTTTTTTAACATCCCGTATCTATTTaccaaaaacagcttttatttaatttacaccTCTCCTTTTGTATAGAACGACCTACCATTCACTGTAACACtaaagcactttaaaacaaacaaacaaaaaaaagactatacATGTAAACgttatgcaataataatatagtCATTAGCACAGATTACGTAATATATATGCACTCACTTTAGTAGCGTACTCAAAGTGTTATTGAGTGACTGACTAAATCTACCTTAGCGTTTAGACCTGGTATGTTGATTACTGTTGATAGGGCTAGATATTACTGTGAAGAGTGCTCTATGTTAGAGCTAATTTCAAGAAAAGCACATTTTCGGTGCTGGCATTcttgctttttcttctttctaaattccacagaagaaagtcatgatGTAAAAAAGGAGTAAaagattagttttatttattttaattcttataATGGTATTAATACACATTGTATTAATGTACGTACACGGTTCCATGctaaattcattttctttttcttttcttttttttttttttttttttcaaagaaatttcTACTGTTGTTCAACAAGGTTGCATCAAGTTGATGAACAATTTTACACCATATTAACGCTTTTAGTGTCTTcactaattcaaataaatgcagctcttTTGAGCAAGCTCTTAGAATCCTGAAAATGTacaatagtagtaataataataaaataataatttaacagtgataaatgtttgttgagcaaattggaatgatttttgaaggatcatctGACACAGATGCCTGGTCTAATAATGgcatcagaggaataaatgacattttaaaacgcaTTACAACAGAAAACGGTACAAAACGACTGTTTTACtccattttaaatcaattacatgcagccttggtgagcttgtgtatatatatattgtatgctAATTTCActgttcattcattaattaccatgacattttgtgtttgtctcaATTTCTCAACTAGTAGCATGGCCATGCGTCATTCGTGTCATGATTTAACCCGAAAGGTTTCCTCAATCTATGCAAAATCTTAGACGCGCTTGTCCCATTTACTCACAAAACACCCCATTCCCGAAAACATTGCACCGTTTGTGAGTAGCCAGTTTGCGGACGGgctcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230378 lncRNA downstream 241 6837129 ~ 6838566 (-) True G155578
TU230288 lncRNA downstream 3218 6835375 ~ 6835589 (-) True G155508
XR_006247875.1 lncRNA downstream 33888 6794103 ~ 6804919 (-) True LOC122328996
TU230208 lncRNA downstream 213539 6624419 ~ 6625268 (-) True G155443
TU230195 lncRNA downstream 226283 6611993 ~ 6612524 (-) True G155435
TU230388 lncRNA upstream 72221 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA upstream 206113 7063578 ~ 7067824 (-) False G155586
TU230405 lncRNA upstream 242843 7100308 ~ 7106154 (-) True G155597
TU230413 lncRNA upstream 262938 7120403 ~ 7301136 (-) True G155605
TU230414 lncRNA upstream 265464 7122929 ~ 7124586 (-) True G155606
XM_043224020.1 mRNA downstream 15775 6820936 ~ 6823032 (-) False rps21
XM_043224021.1 mRNA downstream 15775 6820936 ~ 6823032 (-) False rps21
XM_043225142.1 mRNA downstream 18964 6805369 ~ 6819843 (-) False acss2
XM_043225143.1 mRNA downstream 18964 6805369 ~ 6819843 (-) False acss2
XM_043225141.1 mRNA downstream 18964 6805369 ~ 6819843 (-) True acss2
XM_043225551.1 mRNA upstream 542 6858007 ~ 6867300 (-) True ccm2l
XM_043224119.1 mRNA upstream 14512 6871977 ~ 6926416 (-) True LOC122328429
XM_043224124.1 mRNA upstream 107277 6964742 ~ 6981961 (-) True LOC122328436
XM_043225536.1 mRNA upstream 136702 6994167 ~ 7003523 (-) True LOC122329304
XM_043224180.1 mRNA upstream 151432 7008897 ~ 7060251 (-) True LOC122328474
TU230276 other downstream 15829 6766608 ~ 6822978 (-) False rps21
TU230273 other downstream 15829 6773578 ~ 6822978 (-) False rps21
TU230275 other downstream 15829 6773578 ~ 6822978 (-) False rps21
TU230277 other downstream 15829 6773578 ~ 6822978 (-) False rps21
TU230278 other downstream 15829 6773578 ~ 6822978 (-) False rps21
TU230387 other upstream 550 6858015 ~ 6860648 (-) False ccm2l
TU230380 other upstream 6960 6864425 ~ 6867281 (-) False ccm2l
TU230394 other upstream 109362 6966827 ~ 6981789 (-) False LOC122328436
TU230386 other upstream 136716 6994181 ~ 6996809 (-) False LOC122329304
TU230379 other upstream 143120 7000585 ~ 7003487 (-) False LOC122329304

Expression Profile