RNA id: XM_043224001.1


Basic Information

Item Value
RNA id XM_043224001.1
length 1004
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122328351
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12521821 ~ 12531561 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTGACGGAGAACTGAACACAAGACACACAGCCATGGCTCCTACAATCACTGGATCGATCATCAGCAGAGAACAGCTTCCTCTCACAAACAAGCTGAGAAAGCCAATAGTGGAGAAGATCCGCAGAGAACGAATCAACAGCAGCATCGAGAAGCTCAAGTCTCTTCTGGGTCAAGAGTTCCTGAAGCAACAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTGGATTTCTTGAGACGCCAGCAGCGCTCCCAGAGTCCCTCGGCGTGCGGCTCTCCTGCAGCTCGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTCCTGTCTCAGTGTCCAGTGCAGACGGAGTCCCACAGAAGACTGCTGAAGCACTTCCTGCACACGCAGCCCTGCACAGAGAACAAGACACGAGTGCCTCAGATCAGTCCAGCGGCCGCTCAGAGCAGCGGCAAAGAGCAGACTCTGGCGCTCTGGAGACCCTGGTAGAAGCAGTTCTATGTGAATGTGAACTACCACGATTTACTCTGTTTTTAGAGAACATGTTATTCGATATCTACTCTTTTATGAGAGAGCAATTGACTGTATTCCTATATTTGGATCAGATTGTATTTTTGCCATTGGCAAATTATGCTTCAAGCTAATTGAATCTGCTATGTTAGCAATTATATATCTCATACTGAGATGCAATATTGATATTCTATGAACATGATTCCTGATTCTAAATAGATCCAATGgatcttgtgatttttttaaacctcttgttctattttgaatatttaagtgTTGGTGTTGTAGATTTTATATAATCAACTATATGACCAACAAATTCTTTTATAAAGGTTATTTAAGTAACTGTGTTTTAAACAAGTGACTGATGTGTCTAACAATCAAGCAAACTGGTGGAAAAACAATGTTAAGCACAAAATGAAGATGCTGGATATCatctgcaaatgttttattaaagaaatgtctATTTTACATCTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232665 lncRNA downstream 268885 12252731 ~ 12252936 (-) True G157106
TU232662 lncRNA downstream 269840 12246217 ~ 12251981 (-) True G157104
TU232663 lncRNA downstream 269840 12246217 ~ 12251981 (-) False G157104
TU232657 lncRNA downstream 278140 12243091 ~ 12243681 (-) True G157102
TU232655 lncRNA downstream 280405 12239934 ~ 12241416 (-) True G157100
TU232817 lncRNA upstream 2197 12533758 ~ 12533979 (-) True G157224
TU232855 lncRNA upstream 87458 12619019 ~ 12620057 (-) True G157255
TU232926 lncRNA upstream 321678 12853239 ~ 12853501 (-) True G157295
TU232929 lncRNA upstream 322736 12854297 ~ 12855852 (-) True G157298
TU232998 lncRNA upstream 498305 13029866 ~ 13040397 (-) True G157349
XM_043225274.1 mRNA downstream 2628 12516922 ~ 12519193 (-) True her12
XM_043224674.1 mRNA downstream 81561 12384843 ~ 12440260 (-) True megf6a
XM_043224675.1 mRNA downstream 103518 12384843 ~ 12418303 (-) False megf6a
XM_043225497.1 mRNA downstream 309717 12204333 ~ 12212104 (-) True znf362b
XM_043225159.1 mRNA downstream 455649 12065347 ~ 12066172 (-) True taf13
XM_043225400.1 mRNA upstream 14510 12546071 ~ 12553730 (-) False rnf207b
XM_043225399.1 mRNA upstream 14510 12546071 ~ 12553728 (-) False rnf207b
XM_043225401.1 mRNA upstream 14510 12546071 ~ 12552889 (-) True rnf207b
XM_043225402.1 mRNA upstream 23850 12555411 ~ 12561675 (-) True rcc2
XM_043225403.1 mRNA upstream 23850 12555411 ~ 12561173 (-) False rcc2
TU232479 other downstream 597171 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 720189 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 775201 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 776426 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 779018 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 609517 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 748695 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 1795405 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2049533 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 2815856 15347417 ~ 15474377 (-) False magi3a

Expression Profile