RNA id: XM_043224016.1


Basic Information

Item Value
RNA id XM_043224016.1
length 4319
RNA type mRNA
GC content 0.47
exon number 26
gene id nfascb
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11085866 ~ 11098542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGGATGAAGACAATGAAAAGAGGGAGTCAGTTGGAGAGGTATACATTACAGAAGACATCTGCTTGGATTGACATTGCTTTGGACCTATTTTACAtggaacaaaaatgacatttttggaaaatgggCCAACGATGACATTAATATTAGCATAATGAGGAAACAAACAGCAGAGCTGATATAAAAGcacgGTGAAATGAGCTgctgacacgaataaagaagtTTTGTGAATCCTGGATACTCCAGTTCAGTTGGCCACAATAAGCCAGAGGCTGTACACAGCAGAGATGAGAGCTCTGAAGTGTTGGAGGATTCCTGCCATACTTACTATCCTACAGCAAGCATGGATTTTAGCCATGGAAATTCCTCCTGATGTCAGGCAGCCTCCAATGATCTTTAAAGAGAGTCCTCAAGACTACATAGTAGATCCAGTTGACCCTATTATAGTGGAGTGTGAAGCAACGGGGAATCCACCTCCAGTCTTCACATGGACACGTGACGGAGTGTACCTGAATGTGGCTCGAGACCCTCAGGTCAGCATGAGGTGGCGTTCTGGCACATTAGAGATTTTCTTCTGGGGTCGTCCTGATGACTACGAGGGTGTCTATCAGTGCACGGCGACTAATGAGTTTGGCTCTGCTTTGTCCAGTTACATTAATCTGCGTGTCTCCAAGTCCCGTACGTGGTTGAAGGAGTATCTGGAGCCAGTCTCAGTGGTGGTTGGACTTCCTCTCATCCTTCCCTGCAATCCTCCTGTAGGTCCTCCAAAACCTGACACTTACTGGCTGAACAGCACCATGGCACCAATCCGTCAAGACCGTCGAGTATCGAAGGCTGAAAATGGAGATCTGTACTTCTCCAGTATCGTAGCAGAAGATGCTCTTACAAACTATGTGTGTGTCGCACGCTTCCCCTTCACAAACACCATCCAGCAGAAACCACCGCTCATTCTGCAGGTGCTTACAGCTCGCATGGCAGCCCATACAGCACCCAAGTTTCTGAAACCCAAAGGAACCGCAAGCACAACCATTGCGATGCTGGGTGAAGAGCTTATTTTGGAGTGTTTTGCTGCTGGAGTTCCAACTCCCTTCATCAAATGGACTAAAGATTGGGATGAGATGTCCATGACAGGAAAGAAGTTGGAAAATTTTAATAAGACACTTAGAATAAAGAACGTCTCCATGGATGATGGAGGAGACTACATCTGCAGCGCTTCAAACAGGATGGGCAGCCTGGACCACGTCATCACTGTCAGGGTCAAATCGGTTCCATTCTGGGTGGAGAAGCCTGAGAGTCTGGTTTTGTCTCGTGATGATAGCGGTAGTATAGTGTGTAGAGCTGATGGCATTCCTCGACCCCAGATACAGTGGCTGGTTAATGGAGAGCCAATCAgtgatgcTCCTAAGAGTCCAGGCAGACAGGTTTCAGGAGACACACTGACGTTCAGGGCTGTGGTTCCAGACAGCGCTGCTGTGTTCCAGTGCAATGCTTCAAACCAGTACGGCTATATCATGGCAAACGCTTTCTTGGCTGTAATGGATATGAGACCTCGCCTGTTAGGTCCCAAAGATGAACTCATTAAAACAACTGAAGGCAATAACACTCATCTAGACTGCCCATATTTTGGGTCCCCGAAACCTGACCTGCGTTgGTCAAAAGGAGGACTAGGTACCTTAGAGGGAGGTCGTCATAGGATTCTTCCAAATGGTACATTGGAAATCACAAATACAAAGCTACAAGATCAGGGAAGCTATGTGTGTGTGGCAAGCAACGTCATTGGACGAGACGAGAAGGACGTCCAGctagaggtcaaagagCCCATTAAAATCGTCCGTGTCCCACACAATACTGTAGTCATAAGAGGAAGCCTGGCTCGCTTTGATTGTAAGATTAAATTTGACCCGACTCTGGAAGTCACCGTTACTTGGCTTAAAGACAAGAAGTTCTTGATCTTAGGAAGGAGGATGACAAAGGATGAGGATTCTCTGAGCATTGCTGATGTGTACAGAAGAGATGAAGGCATCTACTCCTGCAGGGTGAAAAGTGAACTGGAGGAGGTCATAGCTTCAGCCAAACTCACTGTGATGGATCGTCCAGATCCTCCCAGCGACCTAGAGATATCAGACCCGTCAGAGAGGAGCGTTAGACTCACCTGGGTACCAGGACTGAGCAACCACAGCCCCATTAAAGAGTACCTGGTTCAATATACCGAAGATCTTCTTGCAGACTATTGGCTGCTGCCAAGCGGCTGGAAGAACCTGTCCAGCTACCCCGGGAACCTAAACTCTGTCGTATTACAGCTGACACCATTTGTAGAGTACAGATTCCGGGTCATCGCTGTAAACGGTATAGGTCCCAGTAAACCCAGCTGGGCATCTGAATACTACCAGACAGGAGGAGCAGTGCCTGATGCCATCCCAAGAAACATCCAAGGAATGGGAAGTGGAGTGTTCAGAAATAACATGGAGATCAGCTGGGAGCCACTGGAGTACAGAGAATGGAATGGGCCGAAACTGGGCTACATGGTTTGGTGGAGACGAAGGGATTCAAGGGAGGAGTGGAAGAACTACACAACATACTGGTGGTGTAGCTACATCATATATGACACAGACACCTTCACACCCTACGAGATTAAAGTTCAGGCCGTCAACTTCTTCGGCTATGGCCCAGAATCCCCTGTTATGATCGGCTACTCCGGGGAGGACCGTCCTGTTGCCGCTCCATCTGACCTGAGAGTGTCGGACATCGAGAGCTCAACGCTGACGGTCCATTGGGAACCAGTGTCACGAGCTGACATCATGGGTGAAATAAAGGAGTACAAAGTTTATTATTGGAGAGAGAGCAGTCGTCTGCCCTGGCACGTTGTGAGCAGGAGGATTAAGACCAAGAGTTTTAAAGCTAATGGACCTCGTCTGTCTGGGACTCTGACTGGTCTTGTCCCGTACAGTAACTACAGGATTTATATTGTAGTGGCCAATAATCGCTATGAGGGTCCGCCCAGCAACACCATTGAGTTTCAGACACCCGAAGGAGTGCCCTCGATTCCCAGATCGTTTAGAATAATGCACCGACACTATGACACTATTTACCTGGACTGGGAAGAGCCTGCAGAACCCAATGGCATTCTGACCGGATATATTCTCAAATATCAGACTTTGAACATCACTCTGAGTGACAGAATCCAGGTTGAATACATTCCTCCGAACATCACCTACTTCTCCCTGCGGCGATTTGACCGCTACACTCGATACAAGTTCTCACTGGCAGCACAAACCGAGCTTGGAGTCGGGGAGGCGTTCACAGAGGAATCACCCCATTTTACAACTGAGGTGCGGGACAAGAGGGACTTTGCAATGGAGCCACTGGATGATAGAGAGAATGGAACGTTTGATTACAGGATAACACGAGTTTCCACAATGCCCTATACCAGACGTGAGGAAGAAAGTCGCCAGGGACGCAGTCAGGGTGCGATCCAGCACATCGACAGGAGAACGAACAGTGACGACAGCCTCATGGAGTACGGTGAGGGCGAGGAGATCGAGTTTAACGAGGACGGCTCTTTCATCGGCGAGTACACAGGCGTCAATAAGAGGAACATGGACAAGAGCCCGTACCACGACAGCTCTGAGCCTACGTCTCCGGTCGCCATCTACTCGTTTGCTTAGAGCTCGTGGTGGGAGGCCCACAGTGTCCCACTGAACCAACTTTACACAGacctcaaaaacacacaaacacaagattATGATCCGATCCAGCCGGACGGGCTGCGAGCGAGAGGTGTAGAGTAGTGTAAACTGGTGTTTCCGGGGTTTACAGTAAAAGTACCAATCAGTGTTTTTCAAATCCACAAATCATGTGAGAGGAAGCCAAGAAGAGATGCCTTGATGTGTTTATCATGTTGATAAGAAGACTGAAAAGAAAACGGCTTGATTCGCTGAACAGACTCGTgctcattttataaaataacctTCAGGATCATTTCACACAGATTTACTTACACGGGCAAAGGAAGAGATGTTGAGCATCAAGAACACCACTGTGCTTTGTCGATTAATCAGTGTTTGATCTTAATGATAGTTGCTACTAATtcgtgtatattttatttttcagtagcaccatttttacttgtatttttgtgtgtttgctgtaCTGTAGGTCACATTAATGGGCTACAAACCATTTATTCTCACACGGAATACAATCTAACTGCTTATTATAGTATGATgtacatgatgttttttttaggcCTATGTTTTTTTGAGTCTGTTAAGAGTACTATCATAAATGTAGTGCTTCggttattaaaatgcatcaagAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231864 lncRNA upstream 2197 11083788 ~ 11085604 (+) False LOC122328437
TU231865 lncRNA upstream 9126 11077362 ~ 11078675 (+) False LOC122328437
TU231851 lncRNA upstream 52306 11033791 ~ 11035495 (+) True G156551
TU231773 lncRNA upstream 167396 10913904 ~ 10920405 (+) False G156497
TU231766 lncRNA upstream 185978 10897004 ~ 10901823 (+) False G156496
TU231887 lncRNA downstream 25550 11124092 ~ 11126634 (+) True G156572
TU231883 lncRNA downstream 50321 11148863 ~ 11152047 (+) True G156568
TU231912 lncRNA downstream 112499 11211041 ~ 11243036 (+) True G156590
TU231915 lncRNA downstream 120493 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA downstream 147009 11245551 ~ 11311487 (+) True G156599
XM_043224126.1 mRNA upstream 2277 11077154 ~ 11085524 (+) True LOC122328437
XM_043224125.1 mRNA upstream 2277 11077289 ~ 11085524 (+) False LOC122328437
XM_043224231.1 mRNA upstream 11870 11068556 ~ 11075931 (+) False naca
XM_043225340.1 mRNA downstream 1530 11100072 ~ 11105175 (+) True LOC122329135
XM_043224114.1 mRNA downstream 42937 11141479 ~ 11147587 (+) True mfsd4ab
XM_043225377.1 mRNA downstream 57280 11155822 ~ 11161895 (+) False LOC122329179
XM_043225378.1 mRNA downstream 57297 11155839 ~ 11161895 (+) False LOC122329179
XM_043225376.1 mRNA downstream 57369 11155911 ~ 11161895 (+) True LOC122329179
XR_006247905.1 other upstream 12064 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 12635 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 163813 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 185661 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 386906 10698927 ~ 10700895 (+) False G156414
TU231904 other downstream 75879 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 414083 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 415231 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 417257 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 419923 11518465 ~ 11518536 (+) True trnae-uuc_33

Expression Profile