RNA id: XM_043224023.1


Basic Information

Item Value
RNA id XM_043224023.1
length 2033
RNA type mRNA
GC content 0.41
exon number 5
gene id ttpal
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14600155 ~ 14603653 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATGGCCAATGGGAGAACGCCTTCACCCTGTATACGGAACTGATTGCGGATTCTTAGCCCATGGCAGACCAAAATGGTCACATTGATCTTGGCCCACCAAAGGAAGCGGTGGAAGGTGTAGGCTTCCCAGCTCCTCCCCCACCCATCTACGCCTGCACCCTGACTCCTGAACTAGTGGCCAAGGCACGTGAAGAGCTCCAGGAGAAGCCCGAATGGAGGCTCCGGGATGTCCAGGCATTACGAGATATGATACTAAAAGACCACCCCAATCTGAGGACACGGTTAGACGATGCATTCTTGCTTCGTTTCCTCAGGGCCAGAAAGTTTGATTATGACCGGGCTCTTCAACTGCTCTTGAATTATCATGCCAGTCGGAGAGCCTGGCCTGAGGTGTTTCAGGACCTTAAGCCCTCCACAGTGAAGCACGTCCTAGATCTGGGTTTTCTCACTGTCCTGCCCAGACCAGATCCTCACGGACGATACATACTGTGTTTACGACCAGGTAAATGGAAGCCTAATGATTACCCATTTGTGGACAACATTCGGgctatttatttgacattaGAGAAGCTGATTCAGCCTGAGGAAACCCAAGTGAACGGAATTGTTATCCTGGTGGATTATACAGGAGTTGGCCTCTCTCAAGCCTCTAATCCAGGACCGCTTTTGGCAAAGAAAGTTGTCGGTATCCTTCAGgatGGCTTCCCAATCAGAATAAAGGCTGTAAACATTATAAACGAGCCACGTATCTTTAAGGgcatttttgcaataattaaGCCatttttgaaagagaaaatggcaGAGAGGTATGTCCTGCATGGCTCAGACTTGGCCTCCCTCCATCGAGTCATTCCTCAGTCTGTGCTGCCTCAAGAGTACGGAGGAGCGGCCGGAAGACTTGACATGTCTGCCTGGTCCAGAACGCTGCTGGAGGCTGAGGAAGAGTTTGTGGTGGAGTTCTGTCAGCCGGATCCTCTGGAGGGCGTCGTTCTGCCAGACTCCATGCTGTTCGAGGGAGAGCAGGCCGGCGCACATGGAGAGGATTCCTTCAGACATCTACGTTCCCAGCTTTATTATTGTTACTGACCTCCTGCTGATGTGTAACGGCTtcttttgaaacatttgttTAGCTGTCACCAACTATGTATTGACCGGTCACCGGATGAGTATGGCCATTTAAAATATCTGGTACAGATGGCTTTTTTTTAGATGCTGGATATATTCTAATTGCTTTGGCTTAAACCATATGTTTTAAAACttgatttaaattcatttcCAGAATACTCATAGCCAGGATTTTAGTCTGTGTCTGTATTTGTTACAGtaagtatttaaatgtgtaatgtaattcTCAGCACTCCATCACTTATTTTATGGCACAAATCAAATATCGCTGGCTCTGATTTACAGTGAAgggaaaattatatatatataaaggtaaaTTAAATAGATGTAGATAGCACATTGGAGATATTCAAAGCAATAACAATGTgcaattttacatataaaagcctcagtgcaaaaaaattattttaacctaCACAGTACAAAATAATGACCATGGTTATTTCCAATTTGTGGACAGCTCTATAATATTGTTTCCCTTATGTCTTTTACTGTTCATGAGTgtgttacatttttgtacacACAATACCGTTGTCATTATAAGTTACATGATAAACTTAGACATGCACAGCATAGATCAAGCTGAGGTCAATTAGCTACTCATTTACATCTCAACAACACGTATTTTAAAAGTTAAGTGGCCAATTCacaatgtgtgtttgtatattgcCATTTGCCAAATTTGTTCAGATGAATATTAATCTTTAATGTTGTATACACCTTGTAAGGATAactgttttgcttttaattcaaGCTTTAAGGGAtgtagtttaatttattttgtcttacCGAGCACATTTTATGCCTTATTTTTAAGCCTTATGTTTAAAGTCAGTATTGTAGACATAtcttattatttcaatattttgtgAAACAGTCAATAAAGATGATAATTTTCAAAGTTAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233366 lncRNA upstream 30646 14569132 ~ 14569509 (+) True G157611
TU233365 lncRNA upstream 31649 14567201 ~ 14568506 (+) True G157610
TU233364 lncRNA upstream 33425 14566519 ~ 14566730 (+) True G157609
TU233363 lncRNA upstream 34099 14564340 ~ 14566056 (+) True G157608
TU233302 lncRNA upstream 225105 14373577 ~ 14375050 (+) True G157551
TU233375 lncRNA downstream 140 14603793 ~ 14623728 (+) True pkig
TU233373 lncRNA downstream 365 14604018 ~ 14623728 (+) False pkig
TU233374 lncRNA downstream 365 14604018 ~ 14623728 (+) False pkig
TU233382 lncRNA downstream 5876 14609529 ~ 15153978 (+) False itih6
TU233383 lncRNA downstream 5876 14609529 ~ 15153978 (+) False itih6
XM_043224256.1 mRNA upstream 1820 14581032 ~ 14598335 (+) True hnf4a
XM_043224255.1 mRNA upstream 1820 14592911 ~ 14598335 (+) False hnf4a
XM_043224259.1 mRNA upstream 19209 14572247 ~ 14580946 (+) True r3hdml
XM_043225541.1 mRNA upstream 46025 14531453 ~ 14554130 (+) False rbms2b
XM_043225540.1 mRNA upstream 46025 14531454 ~ 14554130 (+) True rbms2b
XM_043224566.1 mRNA downstream 356 14604009 ~ 14623731 (+) False pkig
XM_043224567.1 mRNA downstream 4275 14607928 ~ 14623731 (+) False pkig
XM_043223963.1 mRNA downstream 38738 14642391 ~ 14646962 (+) True ccn5
XM_043223964.1 mRNA downstream 43454 14647107 ~ 14649232 (+) True si:dkey-78k11.9
XM_043224379.1 mRNA downstream 46127 14649780 ~ 14659932 (+) True pfkfb1
XR_006247782.1 other upstream 256881 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 543334 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 545655 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3081619 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 3084284 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233368 other downstream 80337 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 108494 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 132348 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 388697 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 697051 15300704 ~ 15304550 (+) True G157620

Expression Profile