RNA id: XM_043224027.1


Basic Information

Item Value
RNA id XM_043224027.1
length 1891
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122328366
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16541514 ~ 16545688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATTTCATAACACGGAAGCcgaatgtgtttattttcaatttttgtgATATGTTGTCAGGCAAGCGATGATAATATTGTAATGTGAGTTATGCGGTTTTAGACACCAAATAACAATCCATAACAACTTGTGCAGTTTCAATAATACGAATTGTGAACTTTGAACTTTGACTATCATCACCATGGCAGAACTAAAAGCGTGTAAAGTGTGTAACGTTAACCGACACAGGTATCACGGCCTGGCTGTAACCTCTctgaatcagctcaaaataAAAGGTGGTGAGACTTTAGGGTTTCATCCCAGTGCATCTGTCTCAGTGGTTCTAGAAGATGATGGGACCATTGTAGAAGACGAGGCTTACTTTTTGTGTCTGCCAGCAAATACAAAATTCATGCTGCTGCATGCCAATGAAATATGGAAGCATTCTCATCAAGTTGATGGAGGGACAGCTCAGTCTTGGAGTAAGTCCACTGATGTGGAAGTAGATGGGAAAGACGAAGTTGATGGGTTTGAATCTTGGCGCAATTTGGCAGAGCAGCTAAGGCAGGACCTGGCCAGTATTATCCTCATGTCTGAGGCCGATCTACAGATTCTGATTGATGTGCCATGCTCCGATCTGGCTGCAGCGATGGACTTCTCACAGCAGAAAACCCGGGTCCTACAGGACACTCTGCAGAGAATGCTGGACCGCagggaagaagagagacagtCCAAAGACTTACTGAAGCTCTATTTGAAAGCCATGGAACAAGAAGGCACCTGGGACCCACAAGAACAAAGCGCTAGACTAGATGAGACAGATGGGGTGCAGGTGGAGGCCGCAGCAGGGTTCAGCCCCACAACTCTAATGGTCCTGAAGGACAAAAAATACCCAGAGACAAGACTGTCCAATGAAGAGCTACAGctGGTGGCGGGGCATGGAGCGGAGGTCATGATGGAGGTGTTGGGCTGGAACAGTGAAAGGACATCAGCACTGGTCCAGGCATGTGAAAGTGAGCTCCGTAAACGCCTACAGCGAGTTCAAGCCCTGCAGTCCCTCAGTGCTTTAAATCAGTCCACTTCACAAGcacacactgagagagacaCCCGAGCCAAGCGccgcaaaacacacacacactgacagaccttttctctttgtttttgtacCGCTTCATTACAATTCATTTAGACTGCGTTGTTTGgtgtttattttgataatagtatttgtgtatataaatgccaaagcataataaaaatcatattttaagcaAGGAAAACATACAGGCTAGTGCtaattttgatgaataaaattcCATGTTTCTTCTCTGTTGTCTACAATTCGATCGGTGAAAATTCAATACTACGCTCTTAAATATAAATCCTCTTTATTAGTATCagtggttccacaaagaacctttagtAACCTTTTCATTCcacaaaaaggttctttagattaataaaatgtttttcacactaagaaaaaaatgcttcttttaagaactgtttacTGAAAGGGCCTTTGAGGACCCAAacatggttcttctatggcattgctgtacaaaaaaaaaccttttggaAGCTCTATTTTTAAGAGTATATGTAATTTTCAAgttgaaagaaaaggaaaatggaaacatttcagagaaaaatgtatgtttcaAAAGGGAGGTAAATTGATTGTACCAAATACCTGTAATATATCCTGACAGATAGGACATTTTAATAACTATTACACGCATTTAATTCTgctttatgatatttatatagCAATGCGTTAACGTATTATTGCAAGGTTCACTAAACGTGTCAAATTGGAAATGTTAGCTATTTAGCCTGTGGggtgcttttttcattttttgaaatgCTAAATGATATCAAATATTGTTGTACTAATAAaagattttgacatttaa

Function

GO:

id name namespace
GO:1900118 negative regulation of execution phase of apoptosis biological_process
GO:0005811 lipid droplet cellular_component

KEGG:

id description
K02310 DFFA, DFF45; DNA fragmentation factor, 45 kD, alpha subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234622 lncRNA downstream 10418 16530052 ~ 16531096 (-) True G158417
TU234605 lncRNA downstream 40664 16498369 ~ 16500850 (-) True G158404
TU234575 lncRNA downstream 97477 16443806 ~ 16444037 (-) True G158388
TU234531 lncRNA downstream 102234 16416925 ~ 16439280 (-) True G158353
TU234642 lncRNA upstream 7355 16553043 ~ 16553395 (-) True G158432
TU234682 lncRNA upstream 61773 16607461 ~ 16607960 (-) True G158462
TU234703 lncRNA upstream 178243 16723931 ~ 16724403 (-) True G158481
TU234705 lncRNA upstream 181750 16727438 ~ 16727715 (-) True G158483
TU234706 lncRNA upstream 182413 16728101 ~ 16728343 (-) True G158484
XM_043224307.1 mRNA downstream 35711 16488226 ~ 16505803 (-) False ribc1
XM_043224308.1 mRNA downstream 47055 16488226 ~ 16494459 (-) True ribc1
XM_043225230.1 mRNA downstream 139809 16399805 ~ 16401705 (-) False tmem107l
XM_043225229.1 mRNA downstream 139809 16399805 ~ 16401705 (-) False tmem107l
XM_043225228.1 mRNA downstream 139809 16399805 ~ 16401705 (-) True tmem107l
XM_043224317.1 mRNA upstream 63790 16609478 ~ 16616339 (-) True LOC122328572
XM_043225250.1 mRNA upstream 128549 16674237 ~ 16677367 (-) True LOC122329052
XM_043225251.1 mRNA upstream 134618 16680306 ~ 16681688 (-) True LOC122329053
XM_043225103.1 mRNA upstream 286397 16832085 ~ 17007286 (-) True plxna2
XM_043225098.1 mRNA upstream 625425 17171113 ~ 17176489 (-) True hrct1
TU234495 other downstream 182809 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 298119 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 371680 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 532599 16008106 ~ 16008915 (-) True G158231
TU234274 other downstream 824264 15699269 ~ 15717250 (-) False LOC122329227
TU234864 other upstream 630964 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 793579 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 1500250 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1685955 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 2201703 18747391 ~ 18754712 (-) True G159076

Expression Profile