RNA id: XM_043224031.1


Basic Information

Item Value
RNA id XM_043224031.1
length 4746
RNA type mRNA
GC content 0.49
exon number 19
gene id phf20b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5153961 ~ 5169328 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGACAGACTCCACCTCGCGGACGCCGGCCTCGCTGCTCGCGCCGGAGAAAACAAACTGCGTGGATGCGATCTCAAAGCATGCGACTTAAAGCGCTCTTCACGCATTTGGACTCGCTTTCTTCGGCGTCGGAGTACATTGATCTGCAATAAAGGTtggtgtgtgagcgtgtgagcaGCATGACAAAGAGCCCTCCTCACAGGCGTGGGATCACGTTCGAGGTGGGAGCGCAGCTGGAGGCGAGGGACAGTCTGAAGAACTGGTACGCAGCTAGCATCGAGAAGATCGACTATGAAGATGAGAAGGTTTTGATTCACTACAGGCAGTGGAGTCACCGTTACGATGAATGGTTTGACTGGAGCAGTCCGTACCTCAGACCTGTGGAACGAATCCAGCTGAGGAAACAAGGTCTCCCTCAGCGGCAGAGCGCTCCAGGCTTTCATGTCAACCAGAAAGTTCTTGCCAGCTGGTCAGACTGCCGGTATTACCCTGCTAAGATCCTGTCCCGGGATAAAGATGGTTTCTACACAGTGAAGTTTTTTGATGGTGTCATAAAGACCGTGAAGGGGATTAAGGTGAAGCCGTTCCGCAAGAGCTCTGATGGCAAGACCAATCAGCGGACTCGGAAACGGGACGATCAGAACGGGAAAAAATGGAAGGCCAAGGAGAACGGCAGCAGCAGAAGTAACGGCTCGAGACACAGCACATCTGACCAGGACGGGGAGAGCGAAatggaggaggatgaagacgaCTCCGGGGTGATGGATGAGGTCGGAAATCTCCAGAACGAGGGAGACAGCGAAAGCACAGCGGATCAGATATTGAACGAGCCAGAGCCCAGTTCTGCTGAGCACAACGAAAAACAGCCCAGCGAAGAACATAAGACAGAGCCCCTTGAGAATGGAGAAGCGAACAAACCAGAGGAGAATGAGATGAATGGAGGACAGGAGGAGTCCCAAGCGCTTCAAAATGGCGTTGACCAGAACGACGGAGAcgagaaagagaaggaagaaGCAACAGATGAAAGCCCAGGTCTTCCCAGAAGGACACGGAGTAAGGCGGCAGATGGTAAAGATACAGAAAAGTGCAACGGTCCAGAACTGAGGAAGAGACGTGCATCAACAGGACAGATGCCACCGTCCAAAAGGAGCAGAGCCAATTCCAGCACAGGGCATCCTGCCTCTGATCCCCTCCTAGACAGAAACAGTCGATCCCAAATCAAAGCGGACTCTGTCCTGGAGACTTCAGTGACTTCGGAGACTTCAGAAAATGCTGCACCCAAAGAAGAGGCAGGATCCACACCTGATCTCGCAGTCAAGCAGCCGCAAACAATCCACCTTCCAACCACGAACAAGTATAGCCGAGAACCATTGTACAGGGTCATCAAAAACCAGCCGCCCCCCATCCTGTCCATAGAACTGGACCACAACCCCTTCAAATGCAAGATCGCAGGCTGCCTCAAGTCTTTCCGCAAGGCGTCTCTGCTGCACTATCACATGAAGTACTATCACGCACAGAGCGACCCAAGCCCCCCTCGCTGCGTCCAGACGCGCTCCTCAGAGAAACAGAGCCACAGCCAGGAGACCCCTCGCAGGCGTCGAACCATCTCGTCTTCCCACCATACTCCCTCTCCTCTGAGTGACAGTAAGTCAGGTCACGCTCTGTCGCCTCCTGCCGTCGGCAGCATGCACCGGCAGCGCTCGGCCACGCTGGGCGCGGAGAGGAGCAAAGAGAACCAACACTTCAACCGCTCGCTGCATGACGACAGAGACTGGGTTGCCAAGGAAACAGGAGCCAAAGAACGGGAGAGGCTGAGGGAGAAGAGGCAGAGGGATTTCTTCCGCATCAAACTGAAgaaaaggaagaagaagaaaaggaagTCGAAGTCAGACTGTTACAGCACTGAGGAGAGCAATGGCCTAAAGCCTCCCCCCTGCAATCTGAATTCTGCTCACAAATTGCCCCTCTCCCTCACACACCGATCCTACACGGGACACTGCCCCGAAAAGATGCTCAGCCAGGGTGAAGACAGCAGCAGTGATTTGTCTTCAGACAGTCCTGTATGGAGTGAGGACGAGTCTGACACTGAGCTGGATCTGAACATGCCCCTCTCAGAGCAGGGTGTAGAAACGGTCACTCACGGCTCTGAGATCGTACGCTGTATTTGTGAAGTGCAGGAGGAGAACGACTTCATGATACAGTGTGATGAGTGTCTGTGCTGGCAGCATGGGACATGTATGGGTCTGTATGAGGACAGTGTGCCAGACAGCTACAGCTGCTACATCTGCAGAGACCCACCAGCCCAGAGGCAGAGTCAGAGGTACTGGTATGATAAAGACTGGCTTAGCAGCGGTCACATGTATGGCTTGTCTTTCCTGGAAGAGAACTACTCCCACCAGAACAGTAAGAAAGTGGCAACCGCCCATCAGCTCCTCGGAGATGTCCACCGTGTGTTTGAGGTCCTGAATGGCCTTCAGCTGAAGATGAGCATCTTACAGACGCAAGCCCATCCAGACCTGAAGTTCTGGCGGCAACCCTGGAAGTCTGCGGACGGCCTACGGAGGAAGACGGCAGGTGACTCGGGCATTGCGACTCCCTTCCCCTCCTCACCCCCTGAAATGGGAGCAAACGAGTTTGAGACGTTGAAGAGCGAAGTCCCGTCACCTGTGGAGACGCATTGCTCTTTCCAGGACTCGTACATTAGCAGCGAGCACTGCTACCAGAAGCCCCGAACGTACTACCCGGCGGTGGAGAGAAGACTAGTGGTGGAGACGCGCTGCGGTTCTGAGCTGGAGGACAGTCTGAGGAGCACCGAAGACCTACTAGAGATGGCCGAGCAGAGGTACGGCACGCAGCTGGACCATGAACAGCACAAGCTTCAGCTGGCCGAACGCTCCTTTAGTAAGGAGCTGGAGTGCCGTATGAAACGCCTGGTTTCCGCAGAGCAGGAAAAGAGTTGTGTGGTAGAAATCAAGGAAGAGGAGCCTGACCCTGTGACCCCTGACCCAAAGCCTGACCCCGACCTCGTGCTGCACCAGCAGTGGCAGCTGAACCTGCTGGAGCACATTGAAGCGGTGCAGGACGAGGTGACGCACAGGATGGACCTCATTGAGCGAGAACTAGACGTGCTGGAGAGCTGGCTGGACTACACCGGTGAACTGGAACCCCCAGATCCTCTGGCGCGCCTCCCTCAGCTGAAACATCGCATCAGACAGCTCCTGACTGACCTGGGCACGGTGCAGCAGATCGCGCTCTGCTCCTCGTCCTCCTGAGGGCGCCAGAGGACACGCAAACACTTCACGCTCAACCAGTTCCTTCAAACTGCTGAAATACATGTGCCTGTGATTTGAGAGGAAAccttttaaatgattcagtgtgACAGCACGTGTGTTGGACGATGGGTCTGGTCAGCAGTTTAACAGTAGTTAGGAGAGACTGATGGAAATCGAGGCCGATACCTGATgcaaacaaaagttttttttgttttttttttgtggaatatAATGCTTCATTGTAGCACTTAGCTATGTCTATCATAGACTagatatgctgtttttgttttgttttattttccccaTGTAATTTTCTCTGTATCCCTCACATgctaaataattgttttatgttaATTCATAAGTGTTTAATAAGTGATCGTTTCGGACTCTCTTGGCACGTCTTTGCTCTGGGTAAAAAGCTTAAGGACCCGAATGGTATTTTgctgtactttaaaaaaaaatgttaaatatgagTATAAcgatatgaaaaaatatattttaatctgaAAATATGTGCAGTTTACTTCTATATTTGTACTAAGAAGTCATGTAATCTTGTAAATAACCCAACCGATTGCTTAAATTTAAGTGCTTAATTTCTTTCGGATCTGAACTGTTTCATTTACAGTAATGACTTTCTGTAAACTCTGATCTATTGTGAATACTGTAGTTGTGGGCTTTCTGCCTATAACCCTTTAATTTTCAACAATTGATGTTGCTTTCATTTCAAATCGGTGAACTTTCCACTGGTACATAAAACAAGCACAGAATGTTGTTCTCTTGCATACTGTATCTTTGtacgtgcatttttttttttttttaagtttcactGTTTCTGATACtgtgttttgttaattgttCTGTTGCTTTCGGGTCTACGACGTTGATTTTAAGACGTTAGATGCCTTTaagttattgtaattttgaatttaAGTTATTGATTCTGCCGCCTTTATGTCTGTCGgttggttttcattttatacaGTGTGAGTCATTGTATCGTCAGAAAGAGAACGAGAGAAAAGCTGGGGTCTTTTTAGTGTTCTCACCctgtggtgtgtttttttttttccatttctaaactattacagttataaaaaacaaacaaactgtgcCTGATCTATTGTTTCAGGCCAGTGCTCCCTCAAATACGGTAAACTACATGTGTTATAAATCAGTGGATTTATAAAATCCTGCCGCCAGATATTTGGAGGGTTTGTGTTTTCTGAACTTTCTCTGTACTGCTAGTGAGTGACTGACAGTCCATTGATTGTTTCTCAgtattgtgtattatatttttacatctgCCCTGTTGCTTTCCAGGCATTGAAAGTGTTgcagttcttttatttttatgttcatgttTTCCATCGTTGGCATCTTACGTCGGGGTCCCTAGGAGTctgtaaaagtaaaagaaaatatacaaataatccAACTGCaaggaaataaatgcaaacatttaaactaaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18402 PHF20; PHD finger protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229770 lncRNA downstream 40997 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 56831 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 64864 5087348 ~ 5089097 (-) True G155153
TU229766 lncRNA downstream 66015 5085142 ~ 5087946 (-) False G155153
TU229708 lncRNA downstream 210944 4908918 ~ 4943017 (-) False G155112
XR_006247896.1 lncRNA upstream 261218 5430546 ~ 5431524 (-) True LOC122329300
TU229897 lncRNA upstream 323403 5492731 ~ 5496474 (-) True LOC122329188
TU229905 lncRNA upstream 355713 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 484690 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 645983 5815311 ~ 5919163 (-) True G155254
XM_043224040.1 mRNA downstream 426 5114627 ~ 5153535 (-) True ndrg3b
XM_043224043.1 mRNA downstream 427 5114627 ~ 5153534 (-) False ndrg3b
XM_043224044.1 mRNA downstream 22699 5114627 ~ 5131262 (-) False ndrg3b
XM_043224046.1 mRNA downstream 43037 5093833 ~ 5110924 (-) False sla2b
XM_043224045.1 mRNA downstream 43514 5093833 ~ 5110447 (-) True sla2b
XM_043224028.1 mRNA upstream 1637 5170965 ~ 5232768 (-) True arhgap46b
XM_043224029.1 mRNA upstream 1637 5170965 ~ 5209242 (-) False arhgap46b
XM_043224030.1 mRNA upstream 1637 5170965 ~ 5192806 (-) False arhgap46b
XM_043225501.1 mRNA upstream 64369 5233697 ~ 5354895 (-) True sulf2b
XM_043225502.1 mRNA upstream 64369 5233697 ~ 5271319 (-) False sulf2b
TU229703 other downstream 319441 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 958963 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 958965 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 1248069 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1707997 3436779 ~ 3445964 (-) False LOC122328836
TU229887 other upstream 285089 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 308586 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 1561523 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1597280 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1604250 6773578 ~ 6822978 (-) False rps21

Expression Profile