RNA id: XM_043224045.1


Basic Information

Item Value
RNA id XM_043224045.1
length 2803
RNA type mRNA
GC content 0.44
exon number 8
gene id sla2b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5093833 ~ 5110924 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACTTCAAAGTCGTAATCTCGGGTCTTAAATCGAATTCAAAATCAACTTGAAAAGCGCTTGCATATGCTCCTTGCTTCAAAGGCATTTCAAAGACCTTTTTCAAAGACCATGTGAAACTTTCTAACAACCATTCTAGCAACAAGTTTTTAGTTCAGACTTGAACTCGTACAGACAAAAAGCTCAATCgttgaaaaaaaagacattcgAGTCGCAACAGGAAATTAGTTACCTTTGCTCTAATCTTTGACCAAATGTGACGGATCTCTATACATTGAGAAATAAAGTGTTGGTTGTGAAATCGCAAGTAAATTTCCCAAATAATTTCAAAGAAACGGCAAGACAATCTCTAATaatctaaagttttttttgtgttgttacAAAGGTGCACCCATCAAATATAATGTTACACATTATTCATAGATTCAGTAGAAAGTCATTAAATGGCTGGCGTTTAGCTGTTGTTTTGTTAGTTTGCATGTTTTCGTGCCTGTATGACGTCCTTCAGTGTAACCGTGTTCATGGGTAGCACATGCAATCAGTTACGCATGTGTTATTTTGGTGTTCGTGGTATGAGGTCTGTAATTTGGACCTGAAGACCCTGATGACCTAGTGAGACCCATCTGTGTTACCAGGTGACCATCTGCTCCATAATGTCATAGAACTGCGGGACCAGTGCCGCtgcattacaatataatatgGAAAAATGCTCATCAAGGATCAGTAATGAATGCTAATGACAGTGTTGAAATCAGAGGGCTGGTTACTTCATGTGTGTTTACTGAACTTATTTATAGCAGCAATTCAATTACAGGCTTATTACAATGTAAGACCATGCAATGAGAATCATTGATGTACAAATATTCAAAGTAGATTTGTATCTTGATACGCATATTTCGACAATGTCGATCATGTTCATTAAACCagatgatttaatttttaaatggtttacaGTAATCATTTTTCATATCGACCCTGTGGGAAGTCAGTGGAAGATTGCTGAACCTCAGCACTTTACAGTCACTTCTAAGTCATATGAGAATATGAGTCacgttatataatatatgatctGTTATTTGCATACCAAATCATTTGAATCTATTGATTTTGCTCATTATTCAGCTTCAATAACTGCAGCTTGCACTGTTGTGATGTAATTGAGCTCGACAGAAAAATGTTCTCCGTTTTACCAGATCTATTTTTAGAATGACCACCCCTTTTTTTAACCAAGGTAAATAAGTGCGTGATACTGAAAGTGCAGATGGAAAGTTTTCGGCAAAGCACACAAGTGGTTTGTCAGCATCCTTCCTCCTCTTGTTCGAAGTGTGACAAAAGAAAGCCATGGCATGAtcaaactATTGTGGTTCCCATCCGCACCGTGTGCCTGAGAAGTCTAGAGCAGTCGGCTATGGGCAGTCGGCCCAGTAAAGACCGGCGTGGATCCCGCTCGCATGCTGTTCTCTTGGACACGGAGCAAAGCACTGACCCGCTGACCACGGACGGCGGTAGGTTCGTGGTGGTGTCCCTGTACGACTACCCGTCCAGAGGGCCCGGGGACTGCACTATCAGAGTGGGAGAGAGGCTCAACATTTTGTCAGATGAGGGCGAGTGGTGGAAAGTCAGTTCATCAGCCACGGGAAACGAGAGCTACATCCCCAGCAACTACACCGCTAAAGTGTACAACAGGTGGCAGTTTGTGGGTCTCAGCAAGCAGAAAGCAGAGGAACTGCTGATGCTCCCTCATAATCAGCCCGGATCCTTCCTTATCAGAGAGAGCGAGACCTACCCAGgtaACCACACTCTGTCAGTGCGTAGGAGCAGCTCGCATGAACGTGCTTCTGTCAAACACTACCGCATCAGCTGCATCGACAACGGCTGGGTCTACATCTCTCCTGGACTCACCTTCAGAACCCTCTCGGACCTGATCACACACTattcagTATCGGACGGGCTGTGCTGTATTCTGGGGGAGCCATGCTACATCGTTGGATCCAACAACGTTCCCGTGGTAACCGGCCCGCCTCCGGTGGCCGTAAAGAGGCCTACTATAAACTGGAAAGACGTTGACAGCGCCATGATCTTCGGGCAGAGAAAAGAGGGGGCAGAGGACTCTGTAGTGAGCGAAGGCCTGAAGGAAGCCATCAACTCGTACCTCTACATGACAGAGGAATGTGAGGACTGCAGTCAGATCTGGGACACATGATTGGAAAACTACGATGAAACTTGGAAGACGAGCGTTTGAACGACTTTGGGCTCTTGATGCTGACACGATGCGGGCTAAAACACTTTAACAAAACTCATTTTCCGTGACCCAGATGGGGAAAATTGCCcaaaacgtctttttttttgttctttttttattcgttaatttctgagtaaaaagtGTTTGAGCGAAAGCGGCGTCGAACGAGGTGCCAGGATGCACGCACTGACTCATTGCTCTTCTTCCAGAGTGGGTGCTGGAGAGAAAGATGTCACTATTTCCTGTGTGGACATGCTCCTGGCGGACATGAAAGAACGACAGCGGAGTGCGTGAGTGGGAGGGGGAACACAGCTGGGTGGTGTACGTATCCATTTCCACTCACACGTTCTGGAACTTTCAGCGGTGTGATCACCATCAGAAAATCAAAACTTCAGAGCAGCTTTACTGATGCTACCAGGGAGTTTAagggtttttgtgttttttttttttggttaaatgcaGAACAAAATACGTATTTATGACTTTGAAAATATTCTAATGCAAATGTATACTGTTGCTTAAAGGTAAAAgagccaaaaattaaaactcattttgaacCTG

Function

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229765 lncRNA downstream 4736 5087348 ~ 5089097 (-) True G155153
TU229766 lncRNA downstream 5887 5085142 ~ 5087946 (-) False G155153
TU229708 lncRNA downstream 150816 4908918 ~ 4943017 (-) False G155112
TU229707 lncRNA downstream 179846 4908918 ~ 4913987 (-) True G155112
TU229682 lncRNA downstream 362693 4727854 ~ 4731140 (-) True G155096
TU229770 lncRNA upstream 1397 5111844 ~ 5112964 (-) True G155157
XR_006247896.1 lncRNA upstream 320099 5430546 ~ 5431524 (-) True LOC122329300
TU229897 lncRNA upstream 382284 5492731 ~ 5496474 (-) True LOC122329188
TU229905 lncRNA upstream 414594 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 543571 5654018 ~ 5662956 (-) True LOC122329299
XM_043224039.1 mRNA downstream 10838 5076353 ~ 5082995 (-) True gss
XM_043225309.1 mRNA downstream 116711 4928029 ~ 4977122 (-) True nkain4
XM_043225310.1 mRNA downstream 116715 4928029 ~ 4977118 (-) False nkain4
XM_043224424.1 mRNA downstream 172951 4914490 ~ 4920882 (-) False ddx23
XM_043224040.1 mRNA upstream 4180 5114627 ~ 5153535 (-) True ndrg3b
XM_043224043.1 mRNA upstream 4180 5114627 ~ 5153534 (-) False ndrg3b
XM_043224044.1 mRNA upstream 4180 5114627 ~ 5131262 (-) False ndrg3b
XM_043224034.1 mRNA upstream 43514 5153961 ~ 5169328 (-) False phf20b
XM_043224033.1 mRNA upstream 43514 5153961 ~ 5169328 (-) False phf20b
TU229703 other downstream 259313 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 898835 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 898837 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 1187941 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1647869 3436779 ~ 3445964 (-) False LOC122328836
TU229887 other upstream 343970 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 367467 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 1620404 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1656161 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1663131 6773578 ~ 6822978 (-) False rps21

Expression Profile