RNA id: XM_043224077.1


Basic Information

Item Value
RNA id XM_043224077.1
length 3323
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC122328402
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2018370 ~ 2028499 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGATCCGGTTCTCTTCGCCGGGAGCGCGCATGCGCAGTGTGCGATTCATTCATCGAGACACTGACGCAGAAATCCACCTGGAGTAACCTAATGCGTGACAAAAAGAAAACGGGAGGACGCGTTTGACCCGTAAACCATGTACACTCCGGCAGCCGATACGGGTGTGACGGTGGTGGAGAAGGATGCCGCTCTGAGCAGCGCCTACTCGCCGGTGGACTACATGAGCATCACCAGCTTCCCTAGACTACCAGAAGATGACGTTTCAGCCGACAACACGCTCAAATCACGCAAAGACGACGATAACTTCCTCAGCGAGCAGGACACGGATCCGGATCTGTTTCTGAAGTCGGCCCGACTGCAGCGGCTGCCCTCCTCCGCCTCGGACCTGGCCAGTCAGGACGTCTCTCCACTGAGGGAGACTAGCAGAGACCCGCTGGCACAGGACTGCGCCTGCACACGCGACGGGCTGACCGTCATCATCACCGCCTGCCTGACCTTCGCCACGGGCGTCACCGTGGCCCTCATAATGCAGATCTACTTCGGAGACCCACAGGTGTATAATCAGGCGGCGGTGGTGACGGATGTGGCCCGCTGCACGTCTCTGGGCTTTGACGTTCTGGCCAAACAGGGCTCCAGTGTTGATGCTGCCATAGCCGCTTCGCTCTGCCTGGGCATCATCCATCCCCACACCTCAGGCATCGGCGGTGGTGGGGTGATGCTCGTCCATGACATCCGCAGGAACGAGAGCCGGGTCATTGACTTCCGGGAGACGGCACCCTCCGGGATCCGCGAGGACATGATGCTGCGCGTCAATCAAAGGTCAGGTCTGTTGGTGGCCGTTCCCGGCATGATCAGCGGACTGCATCAAGCTCATCAGCTCTACGGAAGAATGGTCTGGAAAGACGTCGTCACTATGGCCGCCGATGTGGCGAGGAATGGCTTCAATGTGACGCATGAGCTGGCTGACGCTCTGTCTGAAGTTAAGGAGCAGAACGTGTCGGACGCGTTCAGAGATCTGTTCCTGCCCAACAGTCAGGCTCCACTCGCGGGACTCTTCGCCAAGCGCCTGGACTTAGCCGCCGTTTTGGACAAGATCGCAGCCAACGGAGTCTCCGAGTTCTACAGCGGGAACCTGAcccaggaaatgacatcactgGTTCAAGCTAAAGGAGGTGTGCTGACAGAGGACGACTTCAAAAATTACACCACTGTCATACAGAAGCCGCTTCAAAGCCTTTACCAGGGTTACCAGGTGTTCGTTCCCCCTCCGCCTCACGCCGGAGCCGCCCTGCTGTCCGCTCTCAACATCCTGGAGGGATTCAACATCACGAACCAGGTGCCCAGGAGCAACATTTACCACTGGATCGCCGAGTCTCTGAAGATTGCGCTGTCTCAAGCCAGTGGACTGGGAGACTCCATGTTCGACTCATCGGTTTCTGAGTTGGTGACGCAGATGCTCAGTAAAGACCAGGCTGCTGCGCTCCGGCAGAAGATCAGTGATTCCCAGGCGTCAGCGGCCCAGCACTATATGCCCTCGTACGCGCTTCAGGAGGGCGCTGTGGTCAGCCAGCTCATGATCATGGGCACCGACGACCTGATCGTGTCTGTTATGAGCTCTCTGAACCGGCCGTTCGGGAGCCGTATTGTGACTCCTTCTGGGATTCTTCTTAACAGTCAGATGCTGGACTTCTCTTGGCCTAACAAAACACAAAGCGCTGCAGCTTACAATCAGCATAACAGCATTGAGCCGGGCAAGAGGCCGGCCTCGTTCCTGACGCCGATCGCGGTGAGGCCGTCCATCGGTCTGTGTGGCACATACGTGGCCCTGGGCTCCTCAAACGGCGAGCGGGCGCTGAGCGGCATCACACAGGTTTTGGTCAACGTTTTGTCGTCGCGTAATAACATGAGTGACAGCATTTCCTACGGCAGACTGCATCCTCTCATCCAAAACAACACCCTGCTGGTGGACTCTAAGTTCGCCGAGGCGGATGTGAAGGCTCTGATGCAGAAGGGTCACGACGTGCGTAAGGTGGACATCATCTCACTCGTAGAAGGGACCCGGAGGACCAATGACCTGATCATCGGCGTGAAGGACCCGCGCAGCACTGACGCCTCGGCACTGTCCATGTCCATGCCctagattcacacacacacacacacacacacacacacacactctgtgctGGGGACGTTATGAGGTTAACAAGTTGTAAGGACAGTGTTGATAACCAACATAGATGGGCAGTGTCCGGGAGATAGAAATGAGCTGCTCTCTGCTTCCCCCCCGCCACAAAAACAGCACGGATGATATTTCGTAATGCGAAAGCTCTCCAAATATGTTCTGACGAAAATAAACAAACCTCGATGATCTGGGGGCGAGTACGTTtttaggaatttttttttccgttttttgcattattgataTTTTCCACATTGTGGAATTACGGTAAAGCGATTAAAACCCGAAACAATACAAAGTGTGACACACAAACGTCGAACACAATTATGCTCGTTTGGTTTCCAGCCTTCATCTTCAGCACACTTCTCTCAGAAAACCTGTAAAGTAAACCGTGTTGAAGGTGTTTTGTGTGTACTTTTCCTTTACTCGTGAGATCGTAAGGAACTAttgtgtgtccaaacttttaaCTAATACTctatattttggtttttggtcTTTTTATTATAACTGGTAGTTCATTTGGGGTTGTGTAGGATGTGAATTAGAGGTAGAAGggaaattaaatgattttttttttttcacatcttgCAAGACCTTAATGTCTCTGGAAGTCACTGTAAAGAAGTATCTTCACAGATGTGAGTGATGTTACTCGAAGTGAATGTTACGTTAATCCATGCTCCCGTTCACCAATGAATGACTGtacatgtattatataatgATTAATGGGGGTCGGGTGGCAGCAATATGGTCTCATTTTAGTAGCCAATCAAACCTGGAGTCTGATAAAATGgtctaaaatgaataaagctgGGAGAATGCCTGATgtaaaatagcaatataaaaACCGTAATATGCTTTCAGACGCAGTTTAATACGTGCCATGATTACCTTTCGCACTTTTATTTCGAATTGTGAATGTCACTTtgttaatgtgtatataattataatgcattttcttttctgtgtgGAAACCGTAAAATAAGTTCATGCACATATTTCTGAGCAAAAATCGGTGGATTATTTGAAGTTAAGCTTCTTGTTCGTGGACACATCTGGTATTTTCTGCCACAATATTGCACTGTTACAGCATTACTGTTGTGTTTAGTAGCTTTACGATggagaataaatatttatatgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228138 lncRNA downstream 209365 1808555 ~ 1809005 (-) True G154077
TU228125 lncRNA downstream 302399 1715243 ~ 1715971 (-) True G154064
TU228122 lncRNA downstream 306328 1711732 ~ 1712042 (-) True G154061
TU228119 lncRNA downstream 310915 1707139 ~ 1707455 (-) True G154058
TU228118 lncRNA downstream 311775 1706275 ~ 1706595 (-) True G154057
TU228319 lncRNA upstream 17824 2046323 ~ 2046544 (-) True G154188
TU228325 lncRNA upstream 49065 2077564 ~ 2079496 (-) True G154194
TU228327 lncRNA upstream 64249 2092748 ~ 2095915 (-) True G154195
TU228334 lncRNA upstream 68285 2096784 ~ 2097008 (-) True G154200
XR_006247848.1 lncRNA upstream 70755 2099254 ~ 2102158 (-) False LOC122328884
XM_043224386.1 mRNA downstream 512 2004331 ~ 2017858 (-) False ncoa6
XM_043224082.1 mRNA upstream 551 2029050 ~ 2038336 (-) False LOC122328403
XM_043224081.1 mRNA upstream 551 2029050 ~ 2038334 (-) False LOC122328403
XM_043224080.1 mRNA upstream 551 2029050 ~ 2038334 (-) True LOC122328403
XM_043224083.1 mRNA upstream 551 2029050 ~ 2038331 (-) False LOC122328403
XM_043224833.1 mRNA upstream 74211 2102710 ~ 2116883 (-) False LOC122328833
TU228042 other downstream 506041 1507810 ~ 1512329 (-) False smim29
TU228038 other downstream 506079 1507698 ~ 1512291 (-) True smim29
TU228039 other downstream 506079 1507810 ~ 1512291 (-) False smim29
TU228037 other downstream 506079 1507885 ~ 1512291 (-) False smim29
TU228040 other downstream 506079 1507885 ~ 1512291 (-) False smim29
XR_006247837.1 other upstream 74211 2102710 ~ 2116883 (-) False LOC122328833
XR_006247839.1 other upstream 742908 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 758797 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 896549 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 897030 2925529 ~ 2951628 (-) True G154445

Expression Profile