RNA id: XM_043224088.1


Basic Information

Item Value
RNA id XM_043224088.1
length 1565
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC122328405
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11263398 ~ 11268541 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTAAAGTAAAAGCGTTTGGTCATAAAAAGTTATTTCCAGAGTTTGCGGAACAGCGCCTGGTTCAAACATAGCGCACGGTGGCATTTGTTCGGGTTTGTTTGCTGATGCCGGAGCGAGCTTGACGAAACTCGAAATGTCCATAGCAGCGAGATCAGCGCTCGTCCGCTTCCCACCGCGCCTGCAGCCACGGACCGGACCGAAGAGCATCGCGTTCAGCTTGAAAAGCCCTGTAGTGTTTTGCCAGAGGAAGAAGTCTTCATATGCTACTATTCCTCCTCCTGCTAAATACGGAGGCAGACACACAGTGACTTTGATCCCTGGTGATGGTATTGGGCCAGAACTGCTGAACCACGTCAGAGAGCTTTTCAGATTCTGCTGTGTGCCAGTGGATTTTGAGATAGTCAGGGTGGATTCGTCTGCTTCCTCTGAGGACGACATCAATAATGCGGTGACTGCGATCAAACGTAACGGAGTAGCGCTGAAGGGTAACATAGAGACAAATCACAACCTTCCTCCATCTCATAAATCTAGGAACAACCTGCTTCGCACATTTTTAGATCTGTATGCCAATGTCATGCACTGTCAGTCTCTTCCTGGGGTCCCGACCCGACACAAAGACATTGATGTGATCATTATTAGAGAGAACACAGAAGGAGAGTACAGCAGCTTGGAGCATGAGAATGTTCCCGGGGTGGTGGAGAGTCTGAAGATCATAACTCGTGTCAATTCGCTGCGGATCGCTGAGTATGCCTTTAACTTGGCCAGAGAGAAAGGCCGCTGTAAGGTCACGGCAGTACATAAAGCTAATATCATGAAGCTTGGCGACGGCCTCTTCCTGCAGTGCTGTAAAGAGGTGGCAGCTGGATATCCTGATATCACATTTGATAACATGATAGTGGATAATACCACCATGCAGCTGGTCTCTAAACCCCAGCAGTTTGATGTGATGGTGATGCCTAACCTTTATGGAAATGTGGTGAGCAATGTGTGCGCTGGACTTGTTGGAGGTCCAGGTCTGGTACCAGGAGTCAACTACGGCAAGGACTACGCTGTTTTTGAGACGGCTTCATGCATATGCCAAGATGATTCGAAAAGCAGTTCTGAAAACTTTGTCTGAATCTCAGTGGCAGACTTCTGACTTGGGAGGTCGGGGTACTACGTCTGAAGTGGTCTACTCTGTTATGCAGGAGATCCAGAGAGGAGGACCACGCACTTCAGAACAGATCTGACCTTCATTTCTGCAAGTTCTAGACCCTCTCACACACCTCTAgctcacacacagaaacaatcTAACTCTTTTGTGAAACACTGGACACATTGTGAACTCCTTAATGTAAAGTTAGTGTGTTCAAAGCGTATACGTTTTTCTCTTAAAATCTATATAGCTGGTAGTATAAATGTTTCCTGGtgtgattcatttattatgATCAAGTTGAGTTAAGGCCTTTATCTGAACTGGACCGGACTGCTGTGTATTTCACCCAACTGGTTCTGTATTGAAGTTTGCCTGTTGCTAACTCATGATGCATCGAGCGCTTTCAcgaataaatgttataaaacttCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231912 lncRNA upstream 20362 11211041 ~ 11243036 (+) True G156590
TU231883 lncRNA upstream 111351 11148863 ~ 11152047 (+) True G156568
TU231887 lncRNA upstream 136764 11124092 ~ 11126634 (+) True G156572
TU231864 lncRNA upstream 177794 11083788 ~ 11085604 (+) False LOC122328437
TU231865 lncRNA upstream 184723 11077362 ~ 11078675 (+) False LOC122328437
TU231969 lncRNA downstream 63201 11331742 ~ 11332927 (+) True G156633
TU232036 lncRNA downstream 264094 11532635 ~ 11533198 (+) True G156681
TU232037 lncRNA downstream 266049 11534590 ~ 11534917 (+) True G156682
TU232039 lncRNA downstream 271074 11539615 ~ 11540315 (+) True G156684
TU232041 lncRNA downstream 272099 11540640 ~ 11555919 (+) True G156685
XM_043225296.1 mRNA upstream 94940 11164642 ~ 11168458 (+) True LOC122329091
XM_043225377.1 mRNA upstream 101503 11155822 ~ 11161895 (+) False LOC122329179
XM_043225378.1 mRNA upstream 101503 11155839 ~ 11161895 (+) False LOC122329179
XM_043225376.1 mRNA upstream 101503 11155911 ~ 11161895 (+) True LOC122329179
XM_043224114.1 mRNA upstream 115811 11141479 ~ 11147587 (+) True mfsd4ab
XM_043224071.1 mRNA downstream 16790 11285331 ~ 11301933 (+) True avpr2ab
XM_043224070.1 mRNA downstream 16791 11285332 ~ 11301933 (+) False avpr2ab
XM_043225003.1 mRNA downstream 93341 11361882 ~ 11378016 (+) False myh7bb
XM_043225001.1 mRNA downstream 93341 11361882 ~ 11377521 (+) False myh7bb
XM_043225002.1 mRNA downstream 93359 11361900 ~ 11377521 (+) True myh7bb
TU231904 other upstream 86365 11174421 ~ 11177033 (+) True G156586
XR_006247905.1 other upstream 187661 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 188232 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 339410 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 361258 10902069 ~ 10902140 (+) True trnae-cuc_40
unassigned_transcript_2618 other downstream 244084 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 245232 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 247258 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 249924 11518465 ~ 11518536 (+) True trnae-uuc_33
XR_006247901.1 other downstream 2785823 14054364 ~ 14054500 (+) True LOC122329331

Expression Profile