RNA id: XM_043224097.1


Basic Information

Item Value
RNA id XM_043224097.1
length 3057
RNA type mRNA
GC content 0.43
exon number 10
gene id ptpdc1b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1024657 ~ 1032351 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGCTGTAAGTCAATCAGTTTCCAAAGCTTTGAGAGCCTCACCTCATTGTCATTTTCAGTTACTGCCTTTTTGGTGGCTTGAATTTGCATCCATAAAccgtgcgcgcacacacacagaaataataatgttGGGATTTCTGAATGTGTCTTTCAGTAGTCCCACTTTGTTGGAAAatataaacacgcacacacatatatatatatatatatatatatgtgtgtgcgtgtaatatatatatatattacacttttGTACTTATAAagtcagtttaaaaataaagaacaagaaagttgttttttttactcaacTAATAACTAAAAAGCAGCTCTGAGTGATGATGCTGTCCGTGAGGTCAGTGGTCAGAGAAAAGGGCTATTTCAGGAGTAAGTGGATTAGGTGGTAAATCTCAAGCGAGTCTGAAATAGCTGCTTTATTCACTCTTTGGCCTGGTCTGAGCACAGAACACAGCAGAATTAACTCGGACGCTTGCTGTTGGAAAATGAGCAGGACGACCGGCCGTAAGCTTTGCACCGTGAAGAAGATTGTGCGTCTTAAAAGAAgactaaataaatgatatagtGTCATTTGCTTTTGATTCTTACAACAAAACGGTGCATTACTGAGGGACAAGTTATCAAATCAACTGTGGATTCGATGGATCGGAGGGAAAGTGAAGTTGATTTTCTCTAGCAGTTTTTGGATATTGCCATGGAGGAGGGAGTATCATGGACTTTGTGACGGGTTCCAGGGTTCCCCGAGCCAAATACACAATGGTACGAGAGGCGCTGTGTTATATGATCCCCTATCATATGCAGTGCTCCATGGGATGTGGAGGACCGGCCTGCAAGTATGAGGACCCTTCACACTGGAGTGAAGATGATCAGGCCATTAGAGGAATCTACTCATCTTGgATCACTGAAAATCTGCTGGCTATGGCCCGCCCTTCTACAGAAATCATTGAAAGATTTGATGTAATAGACCAGTTTTTGAGATGTGGTTTGAAGACAGTTATTAACCTCCAGTGCCCTGGCGAACATGCCAGCTGTGGTAACCCACTGGATCCCGAGAGCGGCTTCACTTATCGACCGGAGACATTCATGGAGGCTGGCAtatatttctACAACTTTAGATGGAATGACTATGGTGTGGCATCTCTTACATCCATCTTGGATATGGTAAAAGTCATGTCTTTTGCCGTTCAAGAAGGCAAGCTGGCTGTTCACTGTCATGCAGGGCTTGGCAGAACAGGTGTGTTGCTGGCCTGTTTCTTGTTGTTCACCACACAGATGACAGCAGACCAAGCCATTCTTTTAGTTCGAAGCAAACGACCAAACTCAATCCAGACTAGAGGACAGCTCCAGTGCGTTAGGCAGTTTGCTCGTTTCCTGGTTCCGCTAAGGAACGTGTTTGCTAATGTCGAGTCTAGAGTGCCACCCGTTTCTCTTTCACAATACTTGATCCGCCAGAAACATATACTGCATGGATATGAGGCTCGGAAGTTGAGATACATGCCAAAGCTCATCCCGCTCATTTGCAGGCTTCTACTGGACATCGCAGAGAATCGCCAGGTTATCGAGGAGGACGTTGTAGAAGTTCCTGACGTCACACCTATGGCAGAGAAATCTTTTAATGAGAGTTCAGTATATCAATTAAACAGAGAGATTTTGGGAAATGGGATGACTATGATCCAGCCACGGCTTCCAGGTCTACCCAATAGAGCCAATAGAGACAACACACAACCTCTTTACTATGTCCGTAAGAGCCTTAGCTACAGCGAGTCTGACCTTCAGAGGTTAGCAGCATCTTTAAATCTCTCGGATAACCCTCTCAGTGTTTTAGCAAGCATCCACTCAACTGACATCAGCAATCAGCTAGGAGCTTTCAACTGTGTTTCCCAGAACTACATCATACCTTCTCTGGGGACTTGTAAGGACAATCCCATCTACAGCTCAACCAGTAATATATGGGAGCTAAAAACGCTTATGGACCAGACTGAAGGATCTCCCCTGCTCAAAAACAGGAGGCAGTCTGTTTTGCTGCGAAGCCAATCTCTAATTGTTTCAGATGACAAAAGCACCACAAGCATTGCCAGAATATTGTCTTACTGGAGGAGAGACTGTACACAAAATACACACCCTGACAAAGCTCAACACAATGAAAAAGAGCATTCAGAGGTGCCCTTCATCACTGTCCAGTCTGAGTTGTCTTTGGAGTCACGTCGTCTCCTCGTGGCTCAGTCCCTTGCGGTAGACCTCGAGAATGATGGAGATAAAGAACAAATTCAGAAGGTGTCTACGTGGCAGGAAGATCTTAATTGTCAAGGTGCGTGGGAGCGACTGTGTTTGGAAAAAGACCCATTTATCTTGTCTGGAATCATGTGGTCCTGGCTGGAACAACTCAAAGATCCAGTCATCTCAACTCATGATGTTCACACACTAAAAGAGGCCAACCAGGACCCCGAAACTGTGCTCAATTGCCTAGATAGGGCTTCAAAAGAAACAGGAATGTGCATTCTGGACTGTTTCGCCCGTTTATTAATAATTCCTGAGGAAGTCGAGAGTGCATTTCTGGATCGAGCGGCAAAAGCTTTAACAAAGATGAAAAACACAGACGGTGGGAAGAGTGTCCATGAAATCATGAAAGGGGTCTTGAAGCTTGTTCTGCATCACCTGAGATTGGCTGCCATAAATGAGTTTGAGGTCTAACACATGCAACAAACACTAAACTACAGTTAACTACAAAgaaaatgagtttatttttattaagacaAGCTCTACACATCTGCTGCTGATGTTTCTTTGGTTGTTCCTCAAATCTCGGTTCAGATGAAGAATTCAACATAATTTAGCCCACCGATAGATTGAATTATAACTGTACCATTTTAAGATGTTAGAAATGTGTTTAACACGGTGAACTGTTTGATGTAAAAGAAATACCATACACTGTATGTTATGTGCCATAGTGCTAATACTTGAAAGCATTGCAACTGAAACCTCTCATTTTTGTACCATGTTTGTACagttatttgtaataaaagaaatagaTTGCACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247797.1 lncRNA downstream 61080 960274 ~ 963577 (-) True LOC122328476
TU227875 lncRNA downstream 124891 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 142473 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 142473 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 157910 865477 ~ 866747 (-) False vgll4a
TU227992 lncRNA upstream 173128 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 173128 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 174349 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 357011 1389362 ~ 1393135 (-) True G153984
XR_006247811.1 lncRNA upstream 387506 1419857 ~ 1420454 (-) True LOC122328606
XM_043224145.1 mRNA downstream 5746 1009903 ~ 1018911 (-) False LOC122328452
XM_043224144.1 mRNA downstream 5747 1009903 ~ 1018910 (-) True LOC122328452
XM_043225054.1 mRNA downstream 33213 965674 ~ 991444 (-) True nup210
XM_043225488.1 mRNA downstream 65666 937362 ~ 958991 (-) False LOC122329272
XM_043225485.1 mRNA downstream 90393 905611 ~ 934264 (-) False LOC122329272
XM_043224100.1 mRNA upstream 141 1032492 ~ 1037268 (-) True adtrp1
XM_043224095.1 mRNA upstream 6570 1038921 ~ 1044635 (-) False mybl2a
XM_043224093.1 mRNA upstream 6570 1038921 ~ 1044609 (-) False mybl2a
XM_043224094.1 mRNA upstream 6570 1038921 ~ 1044609 (-) True mybl2a
XM_043224658.1 mRNA upstream 12469 1044820 ~ 1051472 (-) False sgk2a
unassigned_transcript_2578 other downstream 4814 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247804.1 other downstream 238778 779085 ~ 785879 (-) True ndnl2
XR_006247825.1 other upstream 23661 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 475347 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 475459 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 475459 1507810 ~ 1512329 (-) False smim29
TU228037 other upstream 475534 1507885 ~ 1512291 (-) False smim29

Expression Profile