RNA id: XM_043224102.1


Basic Information

Item Value
RNA id XM_043224102.1
length 1901
RNA type mRNA
GC content 0.47
exon number 2
gene id ppp1r3da
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5937632 ~ 5939803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTCGGTAGCCACGCCCCCTCTGTTTGACATCACGCTCCTGCCAGCTCTGCGCAGTTCGCTCGAAACGCATCGTATGTGCGTTGTATCACGTAGTATGCTTCACCTTCGCGCGCAGTTCCCGTCGCGCGCCTCATTATGAAGTGCGCGTTTTGTAAAAAATAGCCTCGGAGGATCGTCAGATGCGTCGTAAACCTAAACAAGACCGACTTTCCTGGTCACACGAGGTAACTCTCTCTAACAAACATGGCCTGGTCTTTGGGATGTTGCCATAAAGACACACCCCTCGAAGAGATGAACGCTGACCTATTTTTTACCGCAGTATCAGATGGCTCAAAAGAAAGTTCCACGCCGATTTTGCAGGACGCGTCCCGCTCAAAACTGGACAGCGCCAAGAGGCCGGTTAAAATTCGTCCGCCGAGCCCAAAGGTCGCCCCGAGGCAGACAGCGGGCCGCAGCCTGTCGTGTGAACCACCGACCAAATCCATCATCCAGAGGCGCACGCAGTCCCTCCCGTCGCCTTCGGAGCGTCGCAGGCTCAGCCGCCGGGCCGGCGTCCGCTTCGTGGACTCCTTAGGGCTGGACCTGGAGAATGTCAAGGTGTTCAAAAGCGGAGAGGACCCGTTCGTCCCCGAGCATGTTCTCTTCAGACTCTTAATGAACGCGGAGTTAGCCTCGAGTAAGAGGATGGAGATTTCCCTGCCGTATTTGAAACCGATGTTCTCCGTCCAGCCGGGGGACTGTCCCGACTTCGCAGAGCGCCTGCGTCGCCAACAGGTGTCTCTGGAGCGGGTCCTGTGCTACGAGCCTGGCATCATAGGGATCGTTCAGGTTGTAAACTTGGCGTTTGAGAAGGAAGTGGATGTGCGCTACTCGTTCACAAACTGGAAGAGCTGCTCGGAAACCAAGGCCTACTGGGTCGCGAGCAAATCCGTCTCGGGCGGGCCCTGCTGTGACACTTTTCGATTTCATTTACCCGTTCCTCCGTACATCCTTCACCCTGGAGCGGTGCTGGAGTTCGCTGTTCGTTATAAAGTAATGGGCATGCAGTTTTGGGATAACAACGGTGGGCAGAATTACAGATTAACCTGTCAGAGTTATAACCTTCCCGTGCCGAAGGAGTGTGAAGACAGCATGATACACTTCATCTGAGGACGCTGATTTTTAAAGCACTGTTTCACTTTATATTTTGCTTGCATACTCACTGTGCAATATACACTTCTGAAAGCCTTGCCGTGGTGTATTTCATTTGTGATTAAGCCATATGAAACGTGAGATGTTTAACTAAGATTTTGACAGCTCGACTGAAGCACTGAGAGTATTACTGTATAGTATATATGTAGATTTAAAAAGTgcctttactgtatttttttacatttcaggtTTGCACTTGCGTGAGGATGTTATTGTCACTATGTGGTACAGTTTCATGATACTTGTGGATGTTGTAAATGCAGGTGTTGGTAGAATACGTAAGGATGGGTAAAAAAACTAATCAGTAATTCTTTACTGCATCACACTGTCCTTCTAATAAAACCTTCGAAATAAAGCCAAATGTAGGCACAAACTGCTGTTTATAAAGTGATGCTGGGGTTATATTTTTGTAGGAACtgaattaacattttagcaCTTTGGATGTCATGCTGAAGTCAGGTGGTTTCTAGAAAATCCGACTGGTGTGTAAAAATTGTgcacaaatgcttttaaaacagcGCTTTTGTCAAAATAACCAGGCTTATGCAAACTATACTGGCTTGAAGTATGAAAAATGTCATCACTTcggcattgtttttttttgttgtttttgtttttatgtgtgtgtttttattgtatgttcAGTGTGTTAGTGCCATGATTAAGGTTATAAcaacaatttatatttacaataaacgATACTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229923 lncRNA downstream 18469 5815311 ~ 5919163 (-) True G155254
XR_006247895.1 lncRNA downstream 274676 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 389924 5525041 ~ 5547708 (-) True G155238
TU229897 lncRNA downstream 441158 5492731 ~ 5496474 (-) True LOC122329188
XR_006247896.1 lncRNA downstream 506108 5430546 ~ 5431524 (-) True LOC122329300
TU230003 lncRNA upstream 251295 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 409205 6349007 ~ 6351825 (-) True G155388
TU230159 lncRNA upstream 544852 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 545637 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 548822 6488624 ~ 6499749 (-) False G155391
XM_043225392.1 mRNA downstream 1569 5919773 ~ 5936063 (-) True sycp2
XM_043225160.1 mRNA downstream 43909 5886612 ~ 5893723 (-) True pigt
XM_043225204.1 mRNA downstream 60767 5872294 ~ 5876865 (-) False haus8
XM_043225324.1 mRNA upstream 4879 5944681 ~ 5949953 (-) True ttll9
XM_043225325.1 mRNA upstream 4879 5944681 ~ 5949946 (-) False ttll9
XM_043225270.1 mRNA upstream 17363 5957165 ~ 5966425 (-) True edn3b
XM_043224063.1 mRNA upstream 89102 6028904 ~ 6084299 (-) True cntn3a.1
XM_043225234.1 mRNA upstream 196759 6136561 ~ 6183159 (-) False chl1a
TU229892 other downstream 457813 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 482585 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1103112 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1742634 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 791049 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 826806 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 833776 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 833776 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 833776 6773578 ~ 6822978 (-) False rps21

Expression Profile