RNA id: XM_043224109.1


Basic Information

Item Value
RNA id XM_043224109.1
length 1712
RNA type mRNA
GC content 0.42
exon number 5
gene id arf3a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15978616 ~ 15983169 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTATCGCGAGAGCGGAGTGACTTGCTTGAAATTATCCGGTGTTGGTCTCCGAGGCTAACCAGCTATCATGGGGAACATTTTTGGCAACCTTTTGAAGAGTCTTATTGGGAAAAAGGAGATGCGTATTTTGATGGTCGGGCTTGATGCGGCTGGGAAGACCACAATCTTGTACAAACTGAAGCTGGGAGAGATAGTGACTACCATTCCTACTATTGGGTTTAACGTGGAGACTGTTGAGtacaaaaatatcagttttacaGTGTGGGATGTTGGTGGCCAGGACAAAATCCGACCTCTGTGGCGTCATTACTTCCAGAACACACAAGGTCTGATCTTTGTGGTGGACAGTAATGACCGTGAGCGAGTTAATGAAGCCCGAGAGGAGCTGATGAGGATGCTGGCTGAGGATGAACTTAGAGACGCTGTACTCCTTGTCTTTGCCAACAAGCAGGATCTGCCAAATGCCATGAATGCTGCAGAAATCACAGATAAGCTGGGCCTCCACTCCCTGCGCCATCGTAACTGGTACATCCAGGCCACTTGTGCCACCAGCGGGGACGGCTTATATGAGGGTCTGGACTGGCTGGCCAACCAGCTCAAGAACAAGAAATGAGGCAGACTGGATCCAAGAGGAAATGGTGTGGCCGAAGAGTCACCTGAGTGACAGCTCATCAGGGAGCACTAGTGGTTTCCAAGTTTCTTTCATTCTGTTTACGAGCTGAAACCAACAGGAGCCGGGTCATTTCAGACATTGTAACCCCTCACTATGTCCCACCTAACAGAGCCGTGAGATGGTTGGGCAAGCACCCatgattcatattcatatttactaGTGAAGATAGACATGTTTTGCTATTCTCGTGTGATTTAAACATCTCGTGTCTCTACactgtaaatgtataaaagacATTAACACGGAGTGAATGAAAAGCTTTTACTTATATTAATACTGTGGGAGTAACTCTTAAATGCaggtcatttaaattatattaaccGCACTGATAGATGAGAAACCTGTTGATTCGGTTTCccgaaatatttaaataaaatcaagtgaaatgttattcagaaaacattaaagaaacatgttgtgttttttgctaCAGCGGTGTTGTTTTGCTACTgacaattaaatatgcattgtgatttattattagcataTCAGCCAGACTTCATGACTGTCAATGATGATGCTCTTATTGCATGCATTCACTAGCGTCTCTGCACAGGTTGCTGAGCAAGCTTTGGTTAGTGCAGTTGTATGTAAATAGATAAAGGATCTCTTGTCTTGGCATGCGTAGTTTGCGACGATTAAATAGTACATTGTTCTCTGTACAAGAACTGTTTCTTTTGTGCTGATATTGTTCACTACCCAAGCCGCTGTTTTGTCGTGTAGCTAAACGCGTTTGTTTCACTGGCTGTATCCGCTGCTTTTGCATGCTGTTTCGTCTGTGTCGTGCCGTGTAGACATGCTCATTGATTGTGTCATTGCATTCGTatgtatgtgattttttttttgttgcttgaGTTGCATGGGCAGATCTGAGGAGCTGAAGAGTAGATCTCTATAGCCCTGTGACTGGAAAGAGTGACTTTACAGTAGACACAGGTAATAGTAGACTCAAATATTTATGGTTGTGTGTATGCTCATGAAAgaagtgtgtttatatattacacgCTTAATAAAGTATGCACTTGGATAAATTAAA

Function

GO:

id name namespace
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234357 lncRNA downstream 12853 15964753 ~ 15965763 (-) True G158227
TU234328 lncRNA downstream 165689 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 189285 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 261372 15699771 ~ 15717244 (-) False LOC122329227
TU234368 lncRNA upstream 24937 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 118456 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 134712 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 263847 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 372200 16355369 ~ 16358705 (-) True G158336
XM_043224950.1 mRNA downstream 2907 15966421 ~ 15975709 (-) False phf8
XM_043224948.1 mRNA downstream 2907 15966421 ~ 15975709 (-) False phf8
XM_043224949.1 mRNA downstream 2907 15966421 ~ 15975709 (-) True phf8
XM_043224058.1 mRNA downstream 14197 15957896 ~ 15964419 (-) True LOC122328386
XM_043224059.1 mRNA downstream 14212 15957896 ~ 15964404 (-) False LOC122328386
XM_043224196.1 mRNA upstream 1736 15984905 ~ 15991565 (-) True wnt10b
XM_043225433.1 mRNA upstream 26551 16009720 ~ 16019647 (-) False ikzf4
XM_043225432.1 mRNA upstream 26551 16009720 ~ 16019647 (-) False ikzf4
XM_043225429.1 mRNA upstream 26551 16009720 ~ 16019647 (-) False ikzf4
XM_043225430.1 mRNA upstream 26551 16009720 ~ 16019429 (-) False ikzf4
TU234273 other downstream 261366 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 261366 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 504239 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1389023 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1647832 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 24937 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 160664 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 257641 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 374483 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1193483 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile