RNA id: XM_043224113.1


Basic Information

Item Value
RNA id XM_043224113.1
length 1580
RNA type mRNA
GC content 0.45
exon number 10
gene id si:ch73-206d17.1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15475723 ~ 15478611 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCACTCTCACGGTCATTGCTCTCAAAGTCAAAATCAAGCCTTATGCTCAAACAAGTCGCTTCAACCAAAAGCAGCCAAAACGATTCCTTTCCGTCATTATTCTAGTAAGGCTAGTTTTGGAAATGTTAAAGGGACACCCTTATGGCTGTACATGCCCAGTGCAACAGCTCCTCTGGCTCTCACCCAATCTGTCGTGAAGAAGGATCAGGTCAACTGGCAGTCATCATTATCCCGAGCTTGCTGGCTCTCAGCACCCTGATCGTTGTGTCTCAGATAATATGGAGCTTTATTACCAAAAGATCATCGTCTCAGATTATAACACGCTCATCTTCAAATGTAAATGAAAGGGAGCCTGTACCTTTGGACACAGGCTTTGGGAGCATGCGGCCTGCACAGGATGCTCTGGATCCATGGGAGATACCTGCTCAGTGCACTCTGGAGGGGGTGGAGCCGCTTCAGAAGGGACGCTATGGACCAATCTGCACGGGACAGCTAAAACAAGACAGCACATCCACTGCTGCAGTGATTAAAACTCTTAAAGATGGGTCAAATCGAGCGGAGGCTACTGAATTTTTGGATTTTGTCCTTTTCAATGCAGCAGTGAGCAAACATGAGAATATAGTCAAGATGTTATACTGCCAGACACGCCGGATGCCCATGTACCTGGTTTTGGAGGCAAGTGTTCCAGGGAACCTCCTGCATTTTCTCTGGAGTCTTCGAGAGAACAGATGTGACTCAAGTGGTAACGTCCAGACCTTTTCAGAAAGCTCCGTTTATCTTGTAGCTAAACAGGTCGCAGCAGGACTGgaCTATTTACACTCCTACCACAGAATTATTCATGGGGATGTCGCAGCCCGGAACATGTTGATTGGTTCAGAGCTCTCTGTGAAAGTCTCTGGATTGGATTGGGCTTTCAAGAGCCGTCAGTCGAGAACAGTCAACAAAGAACAAGAAGCCAATGTGCCGGTGAAATGGAAGGCACCTGAACGGATGATGAGGCTTCCCCTAACAGACAGAAGTGATGTATGGTCCTTTGGAATCCTGCTTTATGAGATGATAACCCTGGgGTGTCCTCCCTATCCTGACCTGGATCCATCTGAAGTGCTGCCAAACACTTTAGCCTATTACCAAATGAAAAGACCAGAAAACTGTGGACGCCCATTGTATGACTTAATAAAGTACTGCTGCATGTGGAATTTCAAGGACCGGCCTGTGTATTCTGCTATTATCCGGCTTCTAGACTCATACAAAAACTTCGCTGACACAAAACCACTTCGCGTTGGACAGCAAATGGACATCTGTGAATACAGGAGAAAAGCAGGACTGCCTCCATGTGATCTGTTCGATCTGAGAACTTGTAATTGATCATTTGTACGACGCATGAAAATGGCACAACTGATTCGATTCCAATAAGACTGACATGAAGTACATTTTAGCCTTGTCACAACAGGCAGAATGTCACTAGAGGTCGCCCTATTTCTTGAAACCGGAGATCGCATGCGAAGTGGTCAACTAAAATTAATCTCAATGCTTGCAgctaatgtaaaacaaaacatataataaaatgttttgaacgtT

Function

GO: NA

KEGG:

id description
K17510 STYK1; tyrosine-protein kinase STYK1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233496 lncRNA upstream 134718 15213327 ~ 15341005 (+) True G157676
TU233485 lncRNA upstream 164029 15182135 ~ 15311694 (+) True G157673
TU233431 lncRNA upstream 166236 15179596 ~ 15309487 (+) False G157633
TU233425 lncRNA upstream 316972 15156461 ~ 15158751 (+) False G157630
TU233443 lncRNA upstream 754238 14719934 ~ 14721485 (+) True G157640
TU233537 lncRNA downstream 432 15479043 ~ 15482462 (+) True G157704
TU233538 lncRNA downstream 4061 15482672 ~ 15486980 (+) True G157705
TU233565 lncRNA downstream 62182 15540793 ~ 15543928 (+) True G157728
TU234068 lncRNA downstream 132996 15611607 ~ 15615798 (+) True G158030
TU234069 lncRNA downstream 134624 15613235 ~ 15613850 (+) False G158030
XM_043224965.1 mRNA upstream 137456 15324344 ~ 15338267 (+) True ptpn22
XM_043224984.1 mRNA upstream 310185 15159750 ~ 15165538 (+) True LOC122328905
XM_043224992.1 mRNA upstream 398213 15074016 ~ 15077510 (+) True LOC122328910
XM_043224991.1 mRNA upstream 705397 14759390 ~ 14770326 (+) True LOC122328909
XM_043224987.1 mRNA upstream 726160 14725910 ~ 14749563 (+) False LOC122328907
XM_043225537.1 mRNA downstream 122041 15600652 ~ 15608453 (+) True zgc:158263
XM_043225542.1 mRNA downstream 194441 15673052 ~ 15685048 (+) True cacnb3b
XM_043225416.1 mRNA downstream 212899 15691510 ~ 15702243 (+) True rnd1b
XM_043225319.1 mRNA downstream 246172 15724783 ~ 15729206 (+) True ptges3a
XM_043225227.1 mRNA downstream 255075 15733686 ~ 15736220 (+) True mipa
TU233395 other upstream 171173 15300704 ~ 15304550 (+) True G157620
TU233466 other upstream 479578 14992350 ~ 14996145 (+) True G157656
TU233447 other upstream 726321 14736001 ~ 14749402 (+) False LOC122328907
TU233419 other upstream 761190 14712147 ~ 14714533 (+) True LOC122328914
TU233368 other upstream 790407 14683990 ~ 14685316 (+) False LOC122328906
TU234237 other downstream 505059 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 529033 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 543588 16022199 ~ 16023394 (+) True G158162
TU234659 other downstream 1142587 16621198 ~ 16664314 (+) True G158446
TU234708 other downstream 1252735 16731346 ~ 16731899 (+) True G158486

Expression Profile