RNA id: XM_043224118.1


Basic Information

Item Value
RNA id XM_043224118.1
length 2457
RNA type mRNA
GC content 0.47
exon number 8
gene id trim35-39
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4517836 ~ 4521780 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAACTCCCCGACTGACTGAAGAGGAGATCTCATGGCATCGGTCGTGAAAACGTTGGACAGCGCCCGAGGTTCGATCTCCGGTCGCACGGTTTCCCGGCGGCCATGAGATGGTGATTTTTCAGTCAATCGGAAGTAACCACTGAGCCAAACCAACGTGAAAGCGGAGGGATCAGAAACCTGCTTTAACTGTAGGGACCTATCGTGCGCATGCGCGCTTCAGCTGTGAATAAACACTTTTTCCATGAGTTATTTTAACACTGCAACATATAAACTTTTAAGTCATCAACAGATTCTTAAATGCACCTAAAGTGAGCTGTTCGTCTTATGCACTAATAGGCCATGAGCAATGccaataatgtaaataactgtttttccAACATTGTCAAGCAAAAGGCTGTAGAATGATAGCGAAAGCAACAAGGCCATCAGAAGTATTCTGGCTGGCTGCATTAAtgatatttaacaattattaataatattatttgcaCGGTTGCATGTTTTACGTTTCATTCTGACGTTTTGAGCTCGCTGTGGTAAAGTTGCGCGTGAAAGACGTGTGGCTGGCtgtcagggttgccaggttttctcAGCAAAACGCAACTTAAAACCAGCCCAATCGCTTTTCAGGGGGATTCAACGGAAATAACGCGGTGATATTTTTTGGCTGATAAACGTTTCGTCCCAGGGCCAGGGGTTTAATACCATGTTACTGAGGTCGCTCCGTCCCGCGGAAAGAGCGGTAAAGACCCCAAGTCCGCGGGAAAACCGTGGACATGGCAACACTTGAGCCTGTCACGGGCCGTGACGTAGGTGAAACTCCACGTGTCGGGCTTGTTTTTAACACTAGGTGGTAAGAAACACCCTTTTAGTGTACACCCTCTTTCAAAGCTTGCACAGACTTGactgtctttgtctttttcctCAAAGTCTCTAAACGTGCACAGACTCGAATGACAGCAGCGCCTGTGTGATTCTTGTGCTACTTTAGGAAAACGTCGAGAAATAAACCGCGTTAACTGGCGCTCCCAAACACTAAAATGGATTCATTCTTCGCGAATGACATTTCCTGTCCGATTTGCTGTGAAATCTTCAAGTCCCCAGTTCTTCTGTCGTGCAGCCACAGTTTCTGCGACGAGTGTCTTCGCCGGTTCTGGAGGACCAAGAAGACTAGAGAGTGTCCCGTCTGCAGGAGAAGATCCTCAAGAGACGCTCCCCCGTCTAATCTCGTCTTGAAAAACTTGTGCGAGTCATTCCTGAAGGAGAGGAGAGATAAGAGGCGTCTATCTGGGTCCGAGGAGGCCTGCGGCTCACACGGGGAGAGGCTCAAGCTATTCTGTCTGGAGGACAAACAGCCGGTGTGCTTAGTGTGCAGAGATTCACAGAAACACATCCATCACACATTCAGACCCATCAGTGAAGTAGTTGAATCTCGTAAGGAGGAGCTGAAGTCCTTACAAGAGAAACTTAAGTGcagtgaaaaatgtaaagaagaTTGTGTGAAAATACTTCAACACATTCGGTCTCAGGTGGAGCACACGGAGTGTCGGATTAAACTGGAGTTTGAGAAGCTTCATCAGTTTCTCAGAGAGGAAGAACGGATTGCAATCCGTGTGTtgagggaggaagaggagcagaagACTCAGATGATGCAGGCGAAGTTTGCGGAGATCAACGCACGCATCTCGGCTCTTTCACGCACAATCGGAGACTTGGAGAAGATGTTGAACACCAATGAAGTCTTTTTTCTAAAGAGCTTTCCGGACGTGATGGAAACCTTACCAGATTCACAGCTGGCTTCTGGAGCTTTGATTAATGTGGCACGTTACCTGGGCAACCTGAGCTTCAGAGCCTGGAAGAAGATGCAAGACGTTGTTCAAAACACTCCTGTGAttctggatccaaacacagctcATCCAGATCTCCTCTTGTCTGATGATCTGACAGAGGTCCAGCAGTTGACACTTCCTGCTAATCCCGAGAAACATTGTTGCGTTCTGGGTTCAGAGGGATTTGACTCGGGAACACACCGCTGGGATGTAGAGGTCAAAGAGAGCTCGTCCTGGAGTCTAGGAATAACTACGGCATCAAACCCGAGGAAGGGATACGATTTTTTTGACAGTGGTGTGTGGAGTGTGCAGCACAGACTGTTTGAAGAGTCAGGTCTTCCTGTCGTACAGCAGCTGGAGCGGGTGAGGGTTCAGCTGGACTGTGACAGAGGAACAGTGTCGTTCTCTGACCCTGTATCTAACACCAATCTATACACGTTAACAACCACCTTCACTGAGACCGTCTTTCCATTCTTTTATAGCTTTTCTCATCTGAGGATCTTATAGTTGAAGGGTTTGTAGATTTGGTGCATTTGGCTCCTCAGAGGAACTAGATCATTGTTTTCACTGCCTTTCTAgcaatgtgtgtttatgtttgctggcatgtaattaaataaaggtCACAGTTG

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229356 lncRNA downstream 173969 4283769 ~ 4343867 (-) False G154895
TU229355 lncRNA downstream 232279 4283769 ~ 4285557 (-) True G154895
XR_006247789.1 lncRNA downstream 315696 4200644 ~ 4202140 (-) True LOC122328378
TU229337 lncRNA downstream 315698 4200882 ~ 4202138 (-) False LOC122328378
TU229221 lncRNA downstream 452307 4063965 ~ 4065529 (-) True G154787
TU229420 lncRNA upstream 25103 4546883 ~ 4550218 (-) True G154933
TU229643 lncRNA upstream 158203 4679983 ~ 4680279 (-) True G155085
TU229677 lncRNA upstream 185885 4707665 ~ 4710337 (-) True G155092
TU229678 lncRNA upstream 190909 4712689 ~ 4713082 (-) True G155093
TU229682 lncRNA upstream 206074 4727854 ~ 4731140 (-) True G155096
XM_043225131.1 mRNA downstream 175197 4340087 ~ 4342639 (-) False LOC122328988
XM_043225130.1 mRNA downstream 175197 4340475 ~ 4342639 (-) True LOC122328988
XM_043225423.1 mRNA downstream 180811 4330715 ~ 4337025 (-) True ptges3b
XM_043224178.1 mRNA downstream 189919 4303555 ~ 4327917 (-) False baz2a
XM_043224117.1 mRNA upstream 146 4521926 ~ 4530336 (-) True si:ch211-117c9.2
XM_043225493.1 mRNA upstream 18522 4540302 ~ 4546406 (-) False edem2
XM_043225492.1 mRNA upstream 18522 4540302 ~ 4546406 (-) True edem2
XM_043225297.1 mRNA upstream 29249 4551029 ~ 4566274 (-) True prpf6
XM_043224062.1 mRNA upstream 290008 4811788 ~ 4815325 (-) True naa10
XR_006247892.1 other downstream 322838 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 322840 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 611944 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1071872 3436779 ~ 3445964 (-) False LOC122328836
TU228728 other downstream 1566208 2942238 ~ 2951628 (-) False G154445
TU229703 other upstream 310038 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 932637 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 956134 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 2209071 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 2244828 6766608 ~ 6822978 (-) False rps21

Expression Profile