RNA id: XM_043224130.1


Basic Information

Item Value
RNA id XM_043224130.1
length 3953
RNA type mRNA
GC content 0.43
exon number 21
gene id stat6
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15737601 ~ 15756066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTGCATCTGGGGTGGCCGGTGGGCAGTAACTTCAGTCAGTAAAGTGAAAGTAAGtggatagaaaaaaaacaaacgcaCACGGAAGGCGCAGACTTATATCTCTTTACGTGCGTTAAAGAGCTGGCGTCGAAATCAGtcCTTGCACACTATGGCGCTGTGGGCACAAATGACCCCGCAGCTACAGTACCTGTCAACCCAGACGCTGAATGAACTCTACCCAGAAACATTCCCTCTGGACGTCAGGCACTATCTGGCCAGCTGGATAGAAGAACAGAGATGGGAGAACTTTGATGTGGACAACATGGAGCAGGAGCCTCAGGCCCTCAGGCTGTTGGAGCAGATGGTGCATTTGCTGCAGGAGGTGGCCCAGCTAAACCCTAACTTGGTGGACAGGGTCAAACTACAACATATCAGCCGGAACTTGAGTGTGTTCCAACCACAACCCATGCAACTTGTGAGGACAGTTCGAGATATTCTAAGGAAAGAAAGACACTTATTAGCACAGGCGCAAATTCCCCAGGGTCCTCCAGATACCAGTGGCACCCCGCAACCAGCAAGAGAAGATGGGAAGACTGATGTGGACAATCTCGTGCTCAAAGTTTTGGAAATTCAGAACTGCCGCCAAACACTTCATCAGCTTCAAGAGGATTTAAACTGGGAAAAGCAGGAAATGGAATCGATTCAAGGTCAAAATGAGTTGGACCCACAGCATTCGGATCAAGTCGCTAGACAGACTCGCATACAGCAGCTTGAGTTCACTTATTCAATCTGTGCAAAGaaGCGTGTCCAGCTCCTTCAAGACGCTCTGCGTGCTCTGGAGCAGTGCCAGGCCTGTCTTCTTCTCAGAATTAAGTCCTGGAGGTGGGAACAGCACAGAGCAACCATTGGTGTGCACTTTGATGACAACCTTGGCTCTCTTCAGACATgGTGTGAGCAGTTGCTCGGAGTAAATGGtaacctgaggcaggagctcatGTTGGTGAAAAGAGACCACGGAGAGGTAGAGACTTTTAACACGTTGGTGGAAAGCCTGGCACATCTGCTCAAAACTCTCATACAGAGTTCATTAGTAGTAGATAAGCAGCCTCCTCAGGTCATCAAAACCCAGTCAAAGTTTTCTACCACTATTCGCTATCTGCTGGGAGAGAAAATGGCCCCTGGAAAACCTGTCCTGTTGAAGGCTCAGATTATTACTGAGGCTCAAGCGAAAAACCTGGGTCAGCAAGAGATCGTTCCCAATGAAAATGTAGGAGAACTTATCAACAGCACAGCCATATTAGAGCACAACACTTCGAGCAAGAGCACATGTGCTACCTTTAGAAACATGTCCATAAGGAGGATCAAACGAGCTGACAGGAAGGGCTCTGAGTCAGTGACGGAGGAAAAGTTTGCTTTGTTGTTTACCACAGAAATAACCATCACGGGCTGCGAGAGCCCTTATGGCATTCAGACAATCTCTCTTCCTGTGGTTGTAATTGTACATGGTAGTCAGGAAATCAATGCTATGGCGACCATAATATGGGACTGTGCCTTTTCTGAATCTAATAGGATACCGTTCGTTGTTCCTGAGCGTGTGTCCTGGAAGCAGATGTGTGAAGCTCTTAGCAGTAAGTTCATGTCTGAAGTTCAGACACAGCGGTGCTTGGACAGATACAACCTTCACTTTCTCGCCCAGAAGATCTTTGACCAACCAGACATCTCTGAAGATTTAAGCAATATGCCAGTGTCATGGGCTCAGTTCAACAAGGAAGTTCTGCCTGGTCGAAACTTCACCTTCTGGCAGTGGTTTGAAGGGGTGATGGATCTTACAAAGAAATGCCTGAGAGACTATTGGAGTGAAGGACTGATCTTTGGCTTCATCGGAAAACAGCATCTCCATGTCATCCTGCAAAACAAACCCAACGGCACCTTTCTTTTGCGCTTTAGTGACTCTGAGATTGGGGGCATCACCATCGCCTATGTGGGCCCCAGTGATAACGGAGGCAGGAAAATCCAGAATATCCAACCCTTCACCAAGAAGGATCTGGACTCAGCGGGCCTTGGCGATCGCATACGGGACATTAACTGCATCACTCACGTGTATCCAGACTTATCAAAGAATGACGTATTTAAGAAATTCTTCACAGTGCCTTCTCCTCCTAATCCTGATGGATATCTGCCATTCAAACTAACAACAGTAGTCAACCCAGGAGACCAGTGTTCCTCCACCTCCAGCATACCACCTGACACTCCTATCGATATGTACGGGCAATCTATGAGCAGTGTCTATGGGTCTAGCATGAATCAGAACATTTTCTCCCCACTTCCTCAATCTACAACCCCTTTTATGCCAGAGCAAATACCTGTTCAAGGACCACTCTACCAATCACCCATGCCACAAGCTCCTTCGAGTGAAGAAATAGACATGGAAGCACTGGAGggaattttgtcatcattttgtCAAAATACTAACAAAGATCTTCATTAGAGGTACAGACCTCTTTGTTCTTGTTGGACAAATGCTATTGGATGGCTTGGTGCTCTAAAGACATCCAGCACAACTCGCTCATCCTAAAGGACACATTATCCATTTGTTCCCCAAAAAAGTGTATCAGTAGGAATGCACTTTTCTTAAATTCATTTCCATGAATCATTGAGCGGTGAGCGTTTTTCTATCACATGGATTGTTTTTTCCTGCATAAACACACTAACCGTGCagtttaaagggacagtgtGTTTCATTTCTATGAGAAGCAGGTGAACCTCTGACAAAAAGAGTCTTGTTAGCATGCAGTACATAAACTCACAAGTCGTTCCCTGTTTCGGTCTTATGACTGCTCCTGAAAGTAGCATTATAACTGACAAGTGAAACAGGAAATTATTTGCTATCAGGTGGTTTTATCAAGAGAGACCAAATAGGTTTaacataatacacatttttgtctGCAAGATTTTTTTCCTTGAAATTTGATGAAGAAAAACATATTCCAGGGACCAAAGTAGATGAGCGAATTTTTACTCCAATGTCCTGAATGAAATGAGATGCAGACAATGATTTGGTGAGCATACTTTTAGACCTTTTACAAATGATaggtttttattaaaagtttttgtgccATATTCCTTatagtcagttttttttttatttggttgtttGATTTGCATGACTTGTGTGTGATCGCATATTCAATATTCAGTATTTGTCTACAGTCTACAGTCAGGTTTGGCCAGTAAAGATAAAATTAgggttttttaaattacatgtgACTAGGGAGTTTTGCTTTACTCATGCATCAGTAGTTCCTCAGTCAATTAGCTCAGTTTTATCGCTGCAGGCCTGCAAAGCTCTCTTTACACCATTGATgggtataaatataaatcatgtgCACAAAATAACAGTAAGGTTTTATGTCATATCCAGACATAATGCTCTCTGTGCGTACTCTACAGTGTTCTGTGtgcacattttctgtatttagtGATACAAGTCATCAACAttcttaaaatgcaaatataatacaGTTTCTCCTCCATAAACTGTGATTTTTGCCGTCCAACGATACTGTTCTATaccttataaaaatataaagctttcattttagtactttgaatatgaaaatatatcaaatggGATGTTTTTCAAAGGTGTCAGTGTAACTGTCTGTATGTATTTAGTCCAGAAGGGAAGTACCAAAcagttttgtttctgttgtCTATTCGGAGGTTGTTTCTGTTGCACTAACTGATGAACGTGCTAGATATGCACCTGCCTGATCGATACCCAAAAATCTCATCATATTGCTGTTACCGGCCACAGAGGAGTATAAAGCAACTTATGCATTTGTCTATgaaaaatttttcttttttcatgcaTGTGACCAAATTTGTAAAGCAGATATGTCCgatttttgtaaaagaaatgttCGTATTCCAATGTTCTGAATCTgataaataaagtcaaaatccATTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247888.1 lncRNA downstream 20357 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 20357 15699771 ~ 15717244 (-) False LOC122329227
TU234271 lncRNA downstream 35371 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA downstream 55729 15680886 ~ 15681872 (-) True G158188
TU234264 lncRNA downstream 130521 15603848 ~ 15607080 (-) True G158174
TU234328 lncRNA upstream 56215 15812281 ~ 15812927 (-) True G158208
TU234357 lncRNA upstream 208687 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 252040 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 345559 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 361815 16117881 ~ 16118214 (-) True G158284
XM_043225119.1 mRNA downstream 13599 15719258 ~ 15724002 (-) False dtx3
XM_043225121.1 mRNA downstream 13599 15719258 ~ 15724002 (-) False dtx3
XM_043225120.1 mRNA downstream 13600 15719258 ~ 15724001 (-) False dtx3
XM_043225125.1 mRNA downstream 13600 15719258 ~ 15724001 (-) False dtx3
XM_043225126.1 mRNA downstream 13600 15719258 ~ 15724001 (-) False dtx3
XM_043224131.1 mRNA upstream 3819 15759885 ~ 15808524 (-) True fignl2
XM_043225011.1 mRNA upstream 58643 15814709 ~ 15860823 (-) False scn8aa
XM_043225006.1 mRNA upstream 58643 15814709 ~ 15860823 (-) False scn8aa
XM_043225012.1 mRNA upstream 58643 15814709 ~ 15860823 (-) False scn8aa
XM_043225007.1 mRNA upstream 58643 15814709 ~ 15860823 (-) False scn8aa
TU234273 other downstream 20351 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 20351 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 263224 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1148008 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1406817 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 252040 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 387767 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 484744 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 601586 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1420586 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile