RNA id: XM_043224144.1


Basic Information

Item Value
RNA id XM_043224144.1
length 3150
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC122328452
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1009903 ~ 1018911 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGACCCCTGTACGTGATGGGCTGGGCAGCACCTCGGGAACACGCCCAGGTATATAAAGCACAGCTGGAGGATGAAGGGCTCAGACCTGCGCCGCGATGCGCGCTCAACACGAGCTGGAGACACCTTGACGGTGGAGCAAGTGGAAAACCCAGGCTACTTCGAACGGACTTTACTTAACCGCTGTTCCTACCCGAAAAGCGCAGTTTCTCGTTACGTCTGAGCGAAACGAGACGGATCCATCATGAGCAGGAGAACACGACGCTGGATATTTCGCATTTTTCTTTGTCTCGGAATAATCTACTTGAAAATGGGGCGGTTCTCCACCGTGCTGGCTCTAGGAGCGAGCATCATATGCAACAAGATCCCTGGCCTGGCGCCCCGGCAGCGCATCATCTGTCAGAGCCGGCCGGACGCCATCATCGTGATCGGACAGGGCGCGCAGATGGGCATCAACGAGTGCCAGTTTCAGTTCAAGCACGGCCGCTGGAACTGCTCCGCGCTCGGCGAGAGGACCGTCTTCGGAAAAGAGCTGAAAGTGGGCAGCAAGGAGGCAGCGTTCACGTACGCCATCGTGGCCGCAGGAGTGGCTCACGCCGTCACAGCCGCGTGCACGCAGGGAAACCTCAGTGAATGCAGCTGTGACAAAGACAAGCAGGGCTTCCACGGCCACGCAGACGGCTGGAAGTGGGGCGGCTGCTCGGCGGACATCCACTACGGCCTGGGCTTCTCCAAAGTCTTCATGGATGCCAGAGAGATCAAACACAGTGCCAGGACACTTATGAACCTGCACAACAACGAAGTCGGGCGGAAGGTCCTGGAGAGGAACATGCGTCTAGAGTGTAAATGTCACGGCGTGTCTGGATCCTGCACCACCAGGACCTGCTGGATGACCCTCCCCAAGTTTCGTGAGCTTGGCTTTATCCTCAAAGACAAATACAGCCACGCCATTCACGTGGAGCCGGTCAAAGCCACCCGCCACAAGAGGCCCACCTTCCTCAAGGTCAAGAAGCCCTACTCGTACCGCAAGCCCATGGACACGGACCTGGTGTACATCGAGAAGTCGCCCAACTACTGCGAGGCGGACCCGGTGACGGGCAGCGTGGGGACTCAGGGCCGGGTGTGCAACAAAACGCTGCTGCACCATCCCAACGGCTGCGACCTGATGTGCTGTGGCCGGGGATACAACACACACCAGTACTCACGCGTCTGGCAGTGCAACTGCAAGTTCTTCTGGTGCTGCTACGTCCGGTGCAACACCTGTAGTGAGAGGACAGAGGTGTACACGTGCAAGTGAGCCGCTCTTACGGACCTCGTTCTGATACAAGAGGACTCTATGAGGTGGCATCTGTTCTTTTGCACAAGGCTCTACTTCAGACTCGCTTTAATGGAAGATCATTGAGATCGTCAAAGCTTTACTCTGGAGAAAGAGGAACTGAAAGTCTAAATCACTGTCTGAATCTGTCTGGATTAAAACAAGGATCTCCGTGGAACCCAGAACAGCAACCTGCACCTTGATTTTACCGATGAGCTACTGAGACACGGACATCTTTGCAGGCATGCAGCAAACCTATATTGACAAACAGAGCAAAACTAGAAATTCCAGAAGTAAAGGGAAAGGACTTTCTAATAgttttttgcttcaaatcaaTCCAGGTGATTTATTACCACCCAAAGTGCTTTGTTTTCTAAAAGTGCTTAACATTCGATTACTCTTTATTTGAAGTtttccttgttacagtgtaattacacatttaagtactgagtaatattaaagtgtccctattatgggttacgaaaggtttatatatttttttggggtGTCCTAAATGACAGGTTGAAATACATGCAAGGCCAAAATATAGGCCTTTATAatccacatttattttatatttatattacatttcatttgaagCAGTAATTGCgagcttttaatgctccaaaagcggcacctagtggcaaagaatgaatgtacattttcattcagacaaacgctaaaagaccaacaagtgggtggcaatatgttaatgtttcatttcgGGTCAACATGTTTTAAACATGACTCATCTCAAACCTTCAGAGTCAGCTCCTTTCCTTTGAGAGACAATTACTTTATAGACTTTTAGGCTTAAAACTTTGCAAGATGTTTTCGTTCGCTTAGAGCTGTGACACTGCATTAAAGCTCGCTTTCAGAAattcataataggggcactttaatgaactacatgtacttactatatggttagggtttgtcttggggttacttgcatgtaattatgcataattaattgttattataatagtaagtacatgttacatgtaacaaggacaccttaaaatagcgTTACCAATTATGCTTAAGTAAGAATATTTAAGTGTACTCAATTATGCTATTTTGGGACGCCatgaatataaactaaaatgtacttttaacatACTTTCTCTGCAGAAACCCACTAGTGCATGAAAGCTAGTGCCTCtaaatagcacagttgagtgCACTTGatgtttttaagattattttaagaagtacagccttttttttgtgttttaattacaaaatgagTGCGTCAAAATAGACcatattatgctttttaaattgcCTTATTtaagatttgtattttgtaaGCGAATTCCTAATATAGAAAAATGTATAGGAAAAGAATATTGGAACCAAGGTTGCTGATTGCGCTGTTGTTAAATTCCTCCAAAcaactgattttatttatttattaaaaacaatgttgttaACTGTAATTGACGAGACGCTGGAAACAAACAGCGCATCTGCATCTCTGCTCATGAATACACTGGGATTTGTATCTTCTGAAAGAATagctttttttagtttacaagACAagaagcaatatttttttttttttctatgagaAATTTCCTGTATGCTGCTAGTCTGGAATAATCACATTCGCTGTAATATTACCAAACTACTGACTACAAGATTTTGTAACTGGTATAGTGATGAATCCAGAAATGTAGAATTTACActgaaattgtaaaatattggtAAGAGAgtatattttgtaaaagaatatttttatatgaatgttttatttatactttgtCATTTCTGAACACCCGATGCATTGCGGGTGACAAAGTTGGAATGTggatgttaattattaaaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247797.1 lncRNA downstream 46326 960274 ~ 963577 (-) True LOC122328476
TU227875 lncRNA downstream 110137 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 127719 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 127719 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 143156 865477 ~ 866747 (-) False vgll4a
TU227992 lncRNA upstream 186569 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 186569 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 187790 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 370452 1389362 ~ 1393135 (-) True G153984
XR_006247811.1 lncRNA upstream 400947 1419857 ~ 1420454 (-) True LOC122328606
XM_043225054.1 mRNA downstream 18459 965674 ~ 991444 (-) True nup210
XM_043225488.1 mRNA downstream 50912 937362 ~ 958991 (-) False LOC122329272
XM_043225485.1 mRNA downstream 75639 905611 ~ 934264 (-) False LOC122329272
XM_043224097.1 mRNA upstream 5747 1024657 ~ 1032351 (-) False ptpdc1b
XM_043224096.1 mRNA upstream 5747 1024657 ~ 1032351 (-) True ptpdc1b
XM_043224100.1 mRNA upstream 13582 1032492 ~ 1037268 (-) True adtrp1
XM_043224095.1 mRNA upstream 20011 1038921 ~ 1044635 (-) False mybl2a
XM_043224093.1 mRNA upstream 20011 1038921 ~ 1044609 (-) False mybl2a
XR_006247804.1 other downstream 224024 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 862 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 37102 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 488788 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 488900 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 488900 1507810 ~ 1512329 (-) False smim29

Expression Profile