RNA id: XM_043224148.1


Basic Information

Item Value
RNA id XM_043224148.1
length 1604
RNA type mRNA
GC content 0.44
exon number 6
gene id tafa1a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11175947 ~ 11213276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagaaagtgtgtgagagagaaagagatgaaatGGGAGAGTgaagcgagcgagagagagagatagagagagagagcaagaaagagggagggaggaagagagagagagtaccgCCCTTCAGTTGTGTTTAAATGTGAAGCGGAAAATCATCTCCGTGGCTCAGGGGAGTGAAGAGGCGATTCTAGTGTTAGATGAGCGGGTTTGCCGTGCTTGAATCAtagcgctctctctctttcgctctttGTTTGTCCTACAGTGTCCCTGATTTCAGCTTCAGGCTTCAAAGTGAGAAGACAGAAGAACTGAGAGTTTCTACAAGACGACCATACCTGTACGCGGGGATATCTGGACACCTCACAATGGATGGATTGAGGACAAATTGTTGAGTTCTCCTACGGCTGTCCCTGAATGATACAGAGGAGTGTTGGGATGTCGTGGCTGGTGTGGGTGTGGGTCAGTGTGACAGTCCTGCTGATGTGCGAGGCCACTTTCTATGAGACCATCCAGCAGCACCTGGCCCCGCCCGGAACCAACATACAGATCCTCGAAGGAGGGACATGCGAGGTGATTGCGGCACACAGGTGCTGTAACAAAAACAAGATTGAAGAGAGATCTCAGACAGTAAAGTGCTCCTGTTTACCAGGGAAAGTGGCAGGAACCACCAGGAATAAACCCTCCTGTGTTGACGCCTCCATAGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCGTGTCTGGAGGGAGAGGAATGCAAGACTCTACCAGATAACTCGGGCTGGATGTGCTACTCCGGAAACAAAATCAAAACCACCAGGaataccCACCCTTACACATCCTTGTAGCAGATGTAATGTTACTGCAAGCTCATAATGGAGGAACTTTATGAAGGGAAACATTCAAGACGACAAGCTGAATTAAGTTTTCTCAACTCTAAACCAACAGACATGTGTTTAATGACTTGAAACGGAGTCCTCTGCTCATAAATCCATCTGTCTCTGACTAACACGGACACCAGACTTTCAATTTTTATGGCCGTTGAACACCGCGGGTTCTttcgttgttttgtttttgtttgacatttgtcaaatatttgtttccTCTCAATGAGTCCTGGATAATTAAACTCGTATCCCTTTGTGTGGAGTGCACTCAAACCAACTATACCTTGCCTGAAATAATCTTCAACTGTATTATTCTTGGATGTTCCTATGTCTCCGGATGAACATATTAAATCTCCTACTGTATGTAGTGAAACTGGCTTCCTGTTCATGTGGATTTGCAGAAGGAGATTGATCCTCATCAAGCaagtttaattaaaagacaCTCTGTGCATCGACTGTGAGTAAAACGCAGAGGAGCACGTGTACAAGGAATGACCGATCCAGTCCGGAAATGTTCCTCCCGTTTCCTGGAACGTTATATCAGATACAAAATGAATTCTGGTGGTgataataaaaccaaataagTCTTCAGCATGATTTCtgtaaagctgtaaaaaaaaaaaaataggtgatggaaatgttttacataaataaaattaattcaaaagagGTGAGAATGATGTTACAAATGTATTTGACTTacaataaactgtaatttaatgtgAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232146 lncRNA downstream 12928 11162664 ~ 11163019 (-) True G156759
TU232098 lncRNA downstream 99986 11071410 ~ 11075961 (-) False G156726
TU232149 lncRNA upstream 31788 11242600 ~ 11244820 (-) True G156762
TU232181 lncRNA upstream 142347 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 165365 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 328811 11539623 ~ 11540045 (-) True G156812
TU232436 lncRNA upstream 551628 11762440 ~ 11763023 (-) True G156962
XM_043225118.1 mRNA downstream 21497 11148868 ~ 11154450 (-) True nucks1b
XM_043224754.1 mRNA downstream 44440 11117682 ~ 11131507 (-) False lemd1
XM_043225473.1 mRNA upstream 27638 11238450 ~ 11241588 (-) True hsd17b10
XM_043225555.1 mRNA upstream 34716 11245528 ~ 11260187 (-) False fam120c
XM_043225554.1 mRNA upstream 34716 11245528 ~ 11260187 (-) True fam120c
XM_043224072.1 mRNA upstream 94467 11305279 ~ 11310902 (-) True sephs3
XM_043225073.1 mRNA upstream 100749 11311561 ~ 11313590 (-) True ssr4
TU232124 other downstream 70724 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 497898 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 808578 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 936674 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 944028 10230546 ~ 10231919 (-) False ankrd52a
unassigned_transcript_2621 other upstream 307198 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 530588 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 530588 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 531858 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 533307 11744119 ~ 11746620 (-) False LOC122328546

Expression Profile