RNA id: XM_043224172.1


Basic Information

Item Value
RNA id XM_043224172.1
length 2035
RNA type mRNA
GC content 0.48
exon number 4
gene id tmem240a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14031726 ~ 14040078 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAATGTGAAAGCGGCTTGCCACACACAGTGTAGCGATCACAGCAGATATGTAAAGTCGACCAcacatttctacaaataaaGCCTCGACGACGACTCTAAGGTCTGCTAGATGTCAGCTCCTAGACAGATATCTCAGAGAGCTAAGGCCAGCTGATCCTGGCGAGACGTTTCCAGCGGCGTCGGAACGCGAAGGAGGAGAGAGGCAGCAGCATCAGTAATCAGACTAGCTCCCTCCCAACCGCACGGCTGAGGCGGATTCAACTGCAGCACTGGGGAACGTATCGCTGGATGTGGGTGAAGACCGTGTGAACGCGCGTGTGGGCTCATACGCCGGGAGAGCGAGATCTGCTCATCCTAACCCTATGCGCCTTAAGAACGCTTCCCAATCTGGCGCGCTCAGGACAGAGGCAGGTGTGAGCGGCGAGGGCGCATCCATGAGCGTCTTCTCCCGGGACGGCATGTTTTTAGTTTAACCGGGATTTGTTTGAGCAGACCGGGGAAGAGGAAAGGCGAGTTCGGAAGTTTTGATGCATATGATCACAACCACCATGATTTTTATGATCCTCGGTGCTTCGGTTGTCATGGCGATAGCGTGTTTAATGGACATGAACGCGCTCCTGGACCGCTTTCACAACTACATCTTACCGCATTTACGAGGGGAGGACCGCGTCTGTCATTGCAACTGTGGAAGGCATCATGTTCACTACGTAATTCCGTATGACGGAGACCATTCGCTCGTGGACTCGTCTGAGAATTACTTTGTGAGTGACAGCGTGACCAAACAGGAGATGGACCTCATGCTGGGGCTGTTGCTGGGCTTCTGTATCAGCTGGCTGTTGTTGTGGCTGGATGGAGCTTTGCACTGTGCTGTGAGGGCCTGGAGAGCCAGTCGCTATTATGATACCCCTTCCTGGTCGTGGTTGCCTCAGTTCTGCAACCTCCGGGACCTCCGTAGACGCGCGCAGCTCCGGCAGCTGGAGGACTCCAGCGGAAACATGGTGCACATCAAGCAGAAGCTCTATCACAATGGTCACCCCAGCCCCCGCCACCTCTGACTTTAACGGCAGTTTCCCCAAAACTGCTCCATTACCAGCTGCTGCCTCAGAGACCCACTTTAATTGTTCCACTACATCTTTTAGACGTTCGAAAACCACTCGAGTATTTgccaaaagaagaaagaagattATCGTTGCCAATATGCTGATCTGTGTCCGCGTTCGCCGCTTTCGGCGAATGGTTtagaaagggttttttttttttctgtacaggCATTTTGTTTTCAATTGCTGAATCTAGGCATGCACTTTTAGAATGGGGGAGGATGCAAGAAATGGTTTTGTGAGACATTGGCAGTCGGTTCATGTTTTTTCCTTGCTTCCCCCCCTCCTCACCTTTTTTAGCTTTTTCATCGGAATACTTTTTGGGAGGGGGGTGATTAGCGGGTGGGGCGGGAGGGCGGAGGTTACGGTTTTGTGATGGTATAGTTAGAGATTAATGCTCTTGTAAATAGTTATACATATTGTTTTACGGGATTTAAGCAAACACGGGAGTAGGAGGTTCTTAGAGACAAGTCATGAACTGtgtaaaaagagagaaaaacataaaGAGGAAAGAATTTCGAATGCTGATATGTGATATGTGAACTTTTTGGATGGATGAAAAagagataattaaaaaaacgatCGATTAGCTTTGTTActatgtgaaataaatgaatgtattaattttatctgtaaataaaGGAGAGTGCAGGAAGGTTGAAATGAGTGGTCAGGGctctttttgctgttttgaacGTCATCCGTCATATTTGAGAGAACTGCTAGCACTTGCCTTGTCTTCCCTACACTGTGTCCAATAGCCCTTCCTGGTCTGCTTTTAAACTACTTCAAACTCAAACAAGAACAACCAGCCTGCCAGCACACAGAGCCCTGACCCaattttctcttcctctttatgTCCAGACATTGCTGTTGTGAAgataaaatgtctgttttattaaaagtgcCATTGAAGCACAACAGTGACCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233703 lncRNA downstream 206137 13823993 ~ 13825589 (-) True G157826
TU233679 lncRNA downstream 258418 13772775 ~ 13773308 (-) True G157813
TU233665 lncRNA downstream 284555 13742257 ~ 13747171 (-) True G157799
TU233620 lncRNA downstream 595865 13433755 ~ 13435861 (-) True G157765
TU233023 lncRNA downstream 909700 13121813 ~ 13122026 (-) True G157365
TU233774 lncRNA upstream 17761 14057837 ~ 14075937 (-) True G157863
TU233788 lncRNA upstream 101863 14141939 ~ 14142168 (-) True G157874
TU233789 lncRNA upstream 103586 14143662 ~ 14143930 (-) True G157875
TU233765 lncRNA upstream 182733 14222809 ~ 14225394 (-) False zbtb48
TU233794 lncRNA upstream 196276 14236352 ~ 14237014 (-) True G157880
XM_043224171.1 mRNA downstream 2558 14025634 ~ 14029168 (-) True LOC122328469
XM_043224162.1 mRNA downstream 6200 14013247 ~ 14025526 (-) True atp13a2
XM_043224166.1 mRNA downstream 26067 14002436 ~ 14005659 (-) False sult1st5
XM_043224794.1 mRNA upstream 45510 14085586 ~ 14094436 (-) True ctdsp2
XM_043224788.1 mRNA upstream 60321 14100397 ~ 14104226 (-) True sdf4
XM_043225302.1 mRNA upstream 110447 14150523 ~ 14196687 (-) True syt6a
XM_043225463.1 mRNA upstream 184512 14224588 ~ 14233051 (-) True zbtb48
XM_043225081.1 mRNA upstream 217774 14257850 ~ 14272460 (-) True avpr2aa
TU233040 other downstream 749399 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 814318 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2107076 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2230094 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2286331 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 286890 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 541018 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1307341 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1659193 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1659193 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile