RNA id: XM_043224174.1


Basic Information

Item Value
RNA id XM_043224174.1
length 2176
RNA type mRNA
GC content 0.42
exon number 4
gene id szrd1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14008220 ~ 14012879 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATGCGCCTCACTAAACGACTCTCTGACGCTGTAGAAGGAAAATGTGCGTTAGCGTGTGGACTGAGGGAAGCCCCTAGTTAGCCAAGAGTGGAAAACATGGATGATGAGGAGGTCGCCGAGAGTTGGGAAGAGGCCGCCGATAGCGGGGAAATGGAAAGGAGACTAGAGGAAAAGCTTCGAATCAGTCAGAAAGAAAGACTTTCAAGTGGCAGTTCAAGCCGTTCTCCGATGAGGACAGCGATCGTAATCCAGGATGACTCCCTCCCCGCAGCACCCCCTCCTCAGATTCGTATTTTAAAGCGACCCTCCAGTAATGGATCTTTAGGATCATCTGTGACGCAGACTCGACCCTCCCCACAAGTAAAATCCTTAGCTCAGCGAGAGGCAGAATACGCAGAGGCCAGGAAGAGAATCCTTGGTAGTGCTACTCCTGATGACGCACCACAGGAGAGATCCAATTCAGACCGATCCCCACGCGGAAGCAGCCATACACTTTCAGAGGAAAACAGATCAGGAAACCATGTGGTTCGACAGCCAGCAGGTCCAGATGGCACACAAGGCTTTCACCACCAGCGCAGATAGGAATAGCAGCCTTTCCTGGGAGAACGGGAGAGGTGATAGTGGGTCTCCCAGAACACTGTTGaaattcaaatcatttttatcaatatttaggATGTGGgatgtttttcaaataagtatAAAACCCTCTTGAATCCAGCACGGCATGTGTGGAATGTAACTGGGGATAGAAACACGATCTCGAGGAGCGGATGGGGAACGTTCCCTGCTTTTACACTGTGATGAGGACCTCGCTTCCGGACACTGCTCACTGTGATGTCCAGCCCCTAGCcctcaaaatcaaaatgaaaatagagaGAAATGAAACCGAACTGCAGAACTATTGTCCCTTCCTCGCGTAACGCAGCCAGCCTGTCATGTCAAGCCCTCTGAAGAGACATTTGAAACGAGATAACAAGTGCTGGATGTGCTAGAACCGATAAAAGGATAGTAAGAGGCACCAGCTTCCTTCAGCAATAATTCTAGAAATATCACAAATTATTCAGACCTCCCTTGCTCACTTTTCTCCCAAGCTTTTGTATTGCTTGTGTTcgtcttttgttttaattttggttacTACTCGCTCGGTCTGCTAATTGccatatgtttttaaatgggtaagaaacAGGGGAGGGTATGTTGTGGAAACTCAAGCTGACTTTGTTCTTTATTGTTTAcggttatctttttttttctttttttcttacgtTGTTTTACTCATGGGTCTTCCTCTGACTGTCCTGATTTctacataaagtaaaaaaaaagaataaaaacaagaacTAGTAGAAAATTAAACGAGTGCAGCAAATCGCATTTTTAAACCGTTTCTATGCCTTTTTATATGATTTGAAAAGGTTCTTTTCAGACCTGTGCATTTTAAGTGAAATCCAGTGGAAAGATGACTCGTGTAAATATTTGTTGTGCTGGGAAGAACTGAAGGGAGTGAAGCCAGGGGATTTTAGCTGGCTCCCCTCGCCTCATTTCTTTATCGAATCTGCtgttggccattttcttccttttttttttttttttttttcttatgtagGAACTCAGGTTGTTGTGAGGAAATCTGAGGGAATGAATGAAGTTGTGTATCAGTGGATAGGTTTTTAACTAAATGATGGTGCAATGTAAAGCTTACATGAAGTATGGCTTCTagatcatttgaaaaacatgtATGACTGGATTACAGAATATCCTATAAGAGATTTAACGTTTATTAAAACctaagaagtgtgtgtgtgttgcaccGGTGGCTTAACAACACAACTTTAATGGAGTGTTAAGTTGACCTAGTTGCTTTGGCTCTTGCAATACAGTGTCTATACATGAAGAGCCATACTACCTTTCTTGACTGTAacttcctgctttttttttttttttttttttttttttttaatttccttccTAAAACTTCCTCTCCTGTACTATCCATAAGTGATATCTGCCTCCTGCAGTTTATGGAAATACCCTTTAATCTGATATGTCATTGTTCACCCATTGTGCTGTAACAAATCAGACCAGACAGGTTTGTCGTGGCCTGCCTGAGAACACAGAAATCTGCCTGTAAATACTTTTCAAAATGCCCAtttaataaagactttttaaataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233195 lncRNA upstream 52674 13955112 ~ 13955546 (+) True G157479
TU233192 lncRNA upstream 54748 13944085 ~ 13953472 (+) True G157476
TU233190 lncRNA upstream 64301 13943589 ~ 13943919 (+) True G157475
TU233189 lncRNA upstream 65788 13942021 ~ 13942432 (+) True G157474
TU233188 lncRNA upstream 66733 13940866 ~ 13941487 (+) True G157473
TU233221 lncRNA downstream 72715 14085594 ~ 14086952 (+) False G157496
TU233222 lncRNA downstream 72715 14085594 ~ 14087258 (+) True G157496
TU233216 lncRNA downstream 74702 14087581 ~ 14088519 (+) True G157494
TU233215 lncRNA downstream 75073 14087952 ~ 14088519 (+) False G157494
TU233223 lncRNA downstream 81199 14094078 ~ 14094458 (+) False c1qtnf12
XM_043225565.1 mRNA upstream 96470 13905088 ~ 13911750 (+) True clcnk
XM_043223991.1 mRNA upstream 176775 13824959 ~ 13831445 (+) False LOC122328345
XM_043223990.1 mRNA upstream 176775 13824967 ~ 13831445 (+) True LOC122328345
XM_043223988.1 mRNA upstream 183683 13814221 ~ 13824537 (+) False ttll10
XM_043225021.1 mRNA downstream 31904 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA downstream 31904 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA downstream 31904 14044783 ~ 14050528 (+) False mlh3
XM_043225025.1 mRNA downstream 37812 14050691 ~ 14056567 (+) True kansl2
XM_043224783.1 mRNA downstream 45091 14057970 ~ 14085170 (+) False nckap5l
unassigned_transcript_2622 other upstream 2489684 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2492349 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2494374 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2495522 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2831187 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 41485 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 43806 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 286822 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 671111 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 699268 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile