RNA id: XM_043224189.1


Basic Information

Item Value
RNA id XM_043224189.1
length 6276
RNA type mRNA
GC content 0.51
exon number 35
gene id lamb2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11961859 ~ 11994891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTCGCCTCAGCTTCCGCGGGCATCTCTTGAATCCAGTGCGTGGTTTCCATCGGTCATTTCCACGGCTGTAACAGGACTTCAGAAAGTCCGTCTGACTCCGATAGCGCTCAAAGTCTCAATGGCTTAAAGAACAGCTTGACCATCGACAAAATCAGAGAAAACGTGAGTACGCGCTTCCAGCAGGAACAAATGCACACCCGTGTTTGTGTCTGATTACTGGTTTTACTGAAGagGCGCGCGGCTGTTGAAGGGAGCTCATCATAAAGCCATGCGCGCGCTTCCCTTGCTGTTCATCTGTGTCCTGTCAGCGTCCAGTGCCCAGGAGCCCGATCTGGCCCATGGCTGTGCCCATGGAAGCTGCTACCCTGCAACCGGTGACCTCTTAGTGGGTCGAGAGATGAACTTGAAAGCTTCATCCACCTGCGGCCTTCGGAGGAGAGAACCCTACTGCATTGTCAGCCATCTGCAGGAAGAGAAGAAGTGTTTCCACTGTGATTCCCGGCGACCTTATGATCCTAATTCCAACCCCATGAGTCACCGCATTGAGAATGTCATCACCACCTTCAAACCACACCGCAAGAAGTCCTGGTGGCAGTCTGAAAATGGAAAGTCTGATGTTTACCTTCAGCTGGATCTGGAGGCGGAGTTTCACTTTACTCATCTCATCATGACTTTTAAGACTTTCCGTCCGGCGGCCATGTTGGTTGAGCGATCTGCAGATTTTGGCCGAACCTGGCAGATGTACCGTTACTTCGCCTTCGACTGTGAGTCCACCTTCCCAGACATTTCCCAAGGTCCTCTTCGTAAAGTTGACGATGTCATCTGCGAGTCCAGATATTCTGACATTGAGCCGTCTACAGAAGGAGAGGTGATTTATCGTGTTCTTGACCCTGCAATCCAGATCGAAGACCCTTACAGCCCCAACATTCAGAACCAGCTGAAGATCACTAATCTCCGTCTGAACTTCACCAAGCTGCACACTCTGGGTGATAACCTGCTGGACTCACGGACCGAGATCAAAGAGAAATACTACTATGCCATATATGAGCTGGTTGTCAGGGGCAACTGCTTCTGCTATGGCCATGCCTCCGAATGTGCTCCTATTGATGGCATCAAGGATGACATCGAGGGCATGGTACACGGGAGGTGTGTGTGCAAACACAACACCAAAGGACTGAACTGTGAACGGTGTGATGACTTCTATAATGACCTGCCCTGGAGACCAGCCGAGGGCCGTAACACTAATGCCtgcaaaaAATGCAACTGTAACGGTCACTCCAACCAGTGTCATTTTGACATGGCTGTTTATCTGGCTACGGGAAACGTCAGTGGAGGTGTGTGTGATAACTGTCTCCACAACACCATGGGCCGCAACTGTGAGACCTGTAAGCCTTTTTACTATCAGGATCCAACTCGGGACATCAGAGACCCTGGAGTCTGCGTGGCCTGCGACTGTGACCCAGATGGTTCTCTGAACGGTGGCATTTGCGATGGGCATGATGACCCCTCTCTGGGCATGATCGCTGGGCAGTGCCGCTGTAAAGACAATGTCGAAGGAGCGCGCTGTGATAAATGCAGACCTGGTTTCTTTGGCCTCAGTGCTAATGATCCTCGCGGCTGCCAACCATGTAAATGTGACCCCAGGGGTACAGTGTCCGGTACTTCTCAGTGTGACCCTGTTAGCGGAGACTGCTTCTGCAAACGTCTCGTCTCCGGACACAGCTGCAACCAATGTCTGCCTGAGCACTGGGCCCTGAGTCATGACGCCAGTGGCTGCAGAGGATGTGACTGTGATGTGGGTGGAGCTACAGACAACCAATGCTCAATGGAAACAGGCCAGTGTCACTGTCGGAGTCACATGATTGGTCGCCAGTGTAACCAAGTGGAGTCTGGGTATTTCTTCATGGCCCTCGACCACTACACCTATGAGGCTGAAAATGCCAAACTGGGTCAAggCTCTGCGTTTGAGGAGAGAGAGTTCCAGCCGGGCCGTCCCGTCTCATGGACAGGCACTGGCTTTGCCCGGGCTCCTGAAGGTGGTACGTTGGAGTTTGCCATTAACAATATTCCATATTCCATGGAATACGACGTCCTCCTCCGCTATGAGCTTCAGATGCCACGAGACTGGGAGGAGGTCCGTGTGATGGTGATTAGACCTGGGCCCATACCTACCAGCAGTCCATGTGGAAACACCATCCCTGCAGATGATCTGCTAACTGTATCGCTCCCATCTGGGGCCAGGTTTGTAGTTCTTCCTCAGCCGGTGTGTTTGGAGAGAGGAGTGAGTTACAAACTGCGTGTGGAGTTCATCCGTTATGCTGACAGGAACAGCATCATTACCTCGGCTAATGCCTTTGTACTTGTTGACTCTATTGCCCTTCTCCCCCGTTACTCTTCTCTAGAGATGTTTACCGCGGGAGACCCCGCCTCCGTTGCACGAAAGCAGAGCTACGAGCGTTACCGCTGCCACGAGACTGCCAAGAGTGTGTCCCGTCCACAGATGAGTGAAGTGTGTGCTAAACTCATCACCAGCATGTCTGCCCTCATTAACGACGGCGCGCTGCCTTGTGAGTGCGATCCTCAGGGTTCGCTCAGCTCTGAGTGTGATGTCCGTGGGGGTCAGTGCCGCTGCAGGCCCAACATATCCGGCCGGCACTGTGATAAATGTGCACCAGGAGCTTACGGCTTTGGTCCTTCTGGATGCAAACTTTGTGAATGTAGTTTGGAGGGCTCTCAGAGCCGATTCTGTGAGCAGTACTCAGGACAGTGTCCGTGTCAGGCCGGTGCGTTTGGTCAGCGCTGTGATGGTTGTCAGGCTGGACACTGGGGCTTCCCGAACTGCAGGCCGTGTGAATGTAATGGACATGCTGATGAGTGCCACCAAAGGACTGGAGCCTGCATCAACTGTAGAAGCAATACAGCCGGGGATAAATGTGATAGGTGTGCTAATGGTTACTATGGAAACCCGGCTCTTGCTTTAGGAAGTCCTTGTCGGCCTTGCCCCTGTCCTGAGGGCCCCAACAGCGGACGCCACTTTGCCGCCTCTTGTTACCAAGACAACCGCAACCAACAGGTGGTCTGCAACTGCAACCAGGGTTACACAGGGATTGTAAAGCGCTCTGCAGGGGCAGTCCTCAAGCGTCCACGATGTGACGAATGTGCTCCGGGTTATTACGGCGACCCCTTTAAGTCCGGTGGACGGTGCCAACCTTGTCGGTGCAGCAACAACATCGACCTATCAGATCCTGAGGCATGTGACAAGCGTACTGGCCAGTGTCTCAAGTGCCTGTACAACACCGAAGGACCGGACTGTGGCATGTGCAAGAGCGGATACTATGGAGATGCTTCCCGCCGCAACTGCCGGAAGTGCACTTGCAACTTCTTGGGCACGGAGCGCAGTCAGTGTCTGTCTCGAGATGACTGCGTGTGCCAGCGTGCCACGGGACAGTGTCAGTGTCTGCCTCATGTTATCGGACAAACCTGTGATCACTGCGCTCCCGATTACTGGAACCTGGCGAGCGGACAAGGCTGTGAGTCTTGTGGCTGTGACCCCAGCAATGCCTACACATCTGCCTGTAACGAGTTCACAGGTCAGTGTCAGTGCCGGGTTGGGTTTGGAGGAAAGACCTGTAAAGACTGCCAGGAGAACCACTGGGGTGACCCCAGAGTACTGTGCCGAGCCTGCGACTGCGACCCCCGGGGCATCGAGTCTTCTCAGTGTAACCGTGTGACTGGTCACTGCGTGTGCCAGCAGGGAGTCTCTGGCGTCCGCTGTGATCAATGTGCCCGTGGTTTCTCTGGCACCTTCCCTGATTGCAAACCTTGCCACCAGTGCTTCGGAGACTGGGACCGCATCGTCCAGGATCTAGCAACCAGAACCAAAGCGCTCACAGATCGAGCCAAGGAGCTTCAGACCACCGGCTTGACTCGAGCCTTTGAGAGAAGATTTAAGGAGTTGGAGGACATGCTGGCACAGGCGAGGGACATTGTTAACGCCCGCAATGCCACCGCTGAGGCTGTGACCACCCTGATGGGAATGATCGAAGATCTCAGaGCTCAGATTGGTGAGACCACGGACACACTGAACCAGCTGGAGGGAGACCTGACCGCTGTGCAGGACAGCAACTATGAAGCCAGTAATGCATTAAGTACCCTGGAGAGAGAAGCAAAAGAACTCAACCTGAACTCAGATCAGCTTAACCGCCAGCTTGACATCCTCAAGAACTCCAACTTCTTGGGTGCATATGACAGCATCCGGGCCTCGTTCAACAAGTCACGTGATGCAGAACACCGCGCCAACAGATCAACCACTGACATTCCCAGCACAGTGAGCCAATCGGCAGACACCCGCAAGAAAACAGAGCGACTGATTGCCCAAAAGAGAGATGATTTTAACCGGAAAAATGCTGCCAACAAGCGGACGCTCACAGACTTAAATGCTAAAGCTCAGAATTTGGACATAAAGAAAATCAATGAAAAGgTGTGTGGAGCCCCTGGTGACACTCCATGTGTGGACAGTCCTTGTGGCGGTGCCGGTTGTCGTGATGATGAAGGCAAACGCCACTGTGGTGGTCTGAATTGCAATGGAGCCGTTGCAGTGGCTAACAACGCCCTGGATAGATCCAAGCATGCAGAAAAAGAGCTGGACAAAGCCATGGGAGTAGTGGAGGAGCTTTTCAAGCAGGTGGCAGATGCTAAGACCAAAGCTCAGGAAGCTAAAGATAAAGCCCAGGCAGCTTTGGAAAAAGCTAGTGATACCAAAAACAAGGTGGATCATTCAAACAATGACCTGAGGGACCTCATCAAACAAATTCGTGAATTCCTCATGCAGGAGGGGGCAGATCCTGACAGCATTGAGGCGGTGGCCAATCGGGTGCTTGAGCTGTCAATCCCTGCTTCTCCCAGGCAGATTCGGCACCTCGCAGATGAGATTAAAGACCGCGTCAAAAGCCTGTCCAATGTGGACGCCATTCTGGAACAGACCCAGAACGATGTCCGCAAAGCAGAAAAACTGCTGCTGGATGCCAAGAAGGCCAGGAACAAGGCGGAGGGAGTAAAGAGCACGACTGAGAATGTGAAAAAGGCCCTGAACGATGCCGGCAGGGCTCAAGCAGCTGCAGAGAAGGCCATTCAGAAAGCTAGAAATGACATCGGCTTGACTCAGAACAGACTAGCACAGATCCAGTCAGAGACCACAGCTCGTGAGAGAGATCTTAATGATGCTATGGACAGATTGGGAGATCTGGGACGCCAAATAGAGGCTTTAAAAACCAAACGTGCCAACAACAGCCTGGATGCAGCCCGGGCTGAGGAGACAGCCACTATGGCCCGGGACAAGGCCAATGAAGCTAAAGAGATCCTGGATGGTGAGCTGTCCGATAAGTACCGTACTGTTCAGGGTCTGATGGACAATAAGGCGAAAACTATGCAGGACGCCAAGCAGAAAGCAGAGCGCCTAAGAGACGAAGCCAAGGAGCTGCTAAGGGATGCCCAGGATAAATTACAGAGACTGGCGGAGCTTGAAAAGGACTATGAGGAAAATCAGAAGGTATTGGAAGGAAAAGCCAGGCAGCTGGATGGCCTGGAAGATAAAATGAAGGCAATCCTGAACGCAATCAATAAGCAGATTCAGATCTACAACACCTGCCAGTAATCGGTCACAGGAAGGAAAGCCCAACAGCTGGACTGCTGCTGTCTTTAAAAGTTCACTACTGTCTGAAAGGATCTGTCATTTGACTTTTTTCCCAGGCTGCTACAGTTTTTGCCAACAAAAGTACAAGACGATGCCAAACTGCCACCAGACACAATGTCTGgaacaaatgttgttttaatgaagGGCTActgttatacaaaaaaaaaactgcattaatgAATTGAATGCTTTGCAGATGTTCACATGCGTCTTGTATGCAAGCAGTATTCTACTTGGTATtagaaatgtgcttttaaatacTGAATGCAGTATAAACAAGATACTGAGTTTGAGCTTGAATGTAAGAGACACTGAATCACGGCACAGAAGTTTTATTGTATAGATTTTCTGCTTgccctttttcttttaaaaccgGTATAGCTTGGTATTAACACTTGTTTTCTAATGAGAAATATACGTTTGTTGTCTTTTGAGAAAATAGTTTCTGAACATCCGTctgaaaaaatacagtaaaagacaTTGTTCGTAAGGAGTTGTCCATGTATCATGTACATTGATGTACACTGTGTTTCTTCTCAcgataaataacacaaataaataaaatccctGTGTGATTTCTA

Function

GO:

id name namespace
GO:0070831 basement membrane assembly biological_process
GO:0016203 muscle attachment biological_process
GO:0061053 somite development biological_process

KEGG:

id description
K06243 LAMB2; laminin, beta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232457 lncRNA downstream 110149 11793603 ~ 11851710 (-) True G156972
TU232440 lncRNA downstream 111277 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA downstream 179493 11781567 ~ 11782366 (-) True G156971
TU232436 lncRNA downstream 198836 11762440 ~ 11763023 (-) True G156962
TU232213 lncRNA downstream 421814 11539623 ~ 11540045 (-) True G156812
TU232469 lncRNA upstream 60355 12055246 ~ 12061368 (-) True G156978
TU232458 lncRNA upstream 66556 12061447 ~ 12064715 (-) True G156973
TU232460 lncRNA upstream 66556 12061447 ~ 12064715 (-) False G156973
TU232520 lncRNA upstream 104076 12098967 ~ 12099726 (-) True G157012
TU232550 lncRNA upstream 156469 12151360 ~ 12156300 (-) True G157035
XM_043224418.1 mRNA downstream 754 11944039 ~ 11961105 (-) False usp19
XM_043224417.1 mRNA downstream 755 11944039 ~ 11961104 (-) False usp19
XM_043224422.1 mRNA downstream 756 11941114 ~ 11961103 (-) False usp19
XM_043224419.1 mRNA downstream 756 11941114 ~ 11961103 (-) True usp19
XM_043224421.1 mRNA downstream 5478 11944039 ~ 11956381 (-) False usp19
XM_043224186.1 mRNA upstream 1079 11995970 ~ 12030230 (-) False lamb2l
XM_043224187.1 mRNA upstream 1079 11995970 ~ 12025111 (-) True lamb2l
XM_043224193.1 mRNA upstream 35959 12030850 ~ 12032746 (-) True si:rp71-17i16.6
XM_043224192.1 mRNA upstream 43142 12038033 ~ 12045305 (-) True si:rp71-17i16.5
XM_043225154.1 mRNA upstream 52225 12047116 ~ 12048791 (-) True LOC122329006
TU232479 other downstream 37209 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 160227 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 215239 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 216464 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 219056 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 1146187 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1285365 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2332075 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2586203 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 3352526 15347417 ~ 15474377 (-) False magi3a

Expression Profile