RNA id: XM_043224195.1


Basic Information

Item Value
RNA id XM_043224195.1
length 1760
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC122328487
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12936321 ~ 12940885 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCATCTATTGTTACAGAGAGTCTCTCCGGTCTAGCCACCGAGCGTCAGTCTCTTATTCATCAggaataatattttgtataagaACCCTGCTGAGAGGAGGGAATAGAGAACAAAGTGACAACAAAAAGTAGACTCGGAGATGTCAGGACTCCCCACGAGCCTGGGGAATAACTGTGACAAGGCAATGTTGTTCTTCCTCTTGaCAGTTGAATCAACCTCAGTGTTATCAGTATAGGGATGTCTCACGTGAAAAAATTACCCGATTTTGTTCTCCTTGCTGTCCCCCCTGGTGGCATTGTACGCAGAATACTCTGGGCATCACAGTTTGATCATATATGTAACGTTCGCTCCTGGACATCAATATTTACCTACATACTCTTCATATGGCATGCTTGATGATTATAGAGTATTTACTTTTGATAGCACCTCCGATGTATTTTCACATCCCTTTGGCCGTGTGGAATCTCTGTCCACTGTCTGGAGAGATCTCAAGGATTGCACAAACTTTAAAACAGGCTATTTAAACCTGTTTTCAAGATATGCTAATTTAACCTTGGGGTTGAAAGgTCCACTCTTGCAGTTAATGTATGGCTGTCAGCTGAGTCATAATGGAACGTCAAGGGGACTGTATTCTTTTTCAGTCAACGGGGACTACAGTCTTTCTATGGACATGGACAGCCCTCATTGGTACTCATACTTGCCCCAAGATCTGGACATTAAACACATTCTAGACAGGTTTGATCTCTGGAATCACAACAATCTCATATACATTCATCGTGATTGTGTTCCTCGACTCAAGAAGTTCTACGAACACAGTAGAACTATGCTTGACCAGAAAGTTCGCCCCGAAGCTGTGATCAGGCACAAGCCTGCTGGAGCTCTTAACTGTGTGGTGACAGGCTTTTACCCTAAAGATATCACCGTGGAGTGGATAGTTAATGGACAGCCAGCCTTAGATGGGATATCAACAGGCTTCCTACCAAATCATGACCAAACATACCAAGTTCAGGTGGCAATTCTCCTATCTGAGACTACACACAACTACACCTGTCAAATAAAGCACAGCAGCCTCCAAGAGCCGATGGTCGTTACGTGGGATGCTTCCTCCACTATGACAGATGTAAAAATGTCTCTTCTTATCGGACTTATAGCAGGACTTATCGCAGCGTTTACACTAACTGTTGTTCTTATGTGTTTCATATTTAAGTGtgtaatttggaaaaaaaaatctatatttgtaatgtaagtgtacattttattattttaattatattaaatctaTTACCGTCATCCTTAactccaataaataaatatatttatatgataaacattatatttctacattattttttattttgtaattaatgttattaaatagtTTGGTTAGTTTATTACTTATTTGAGACTGTCTcgttattatcatttattttgctaCTTTGATCTTGATATATGTACGTAAAAAAAGAATCAGAACCTATTCGATTTCACATGTTAATctttgaaatgcatatttagaTTCACCAAGACAAAtgagattttatgttttatttatgttaagaTTTGATAAAACGTCTGTTCTATTAAAGTGTCTTCTCTGCCTGACTGGATTATATAACAAAGCATGTCAAATTAAGTTTGTTCCATTAACTGCAGCGTCACTACTTTTGCACGTTAGAGAACATGCATAAAAAGGGTTGGGATCATGTGATCCGATCTGATCATCAAGCATAGAAATGTGAATATCAACTGATGTGTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232929 lncRNA downstream 80469 12854297 ~ 12855852 (-) True G157298
TU232926 lncRNA downstream 82820 12853239 ~ 12853501 (-) True G157295
TU232855 lncRNA downstream 316264 12619019 ~ 12620057 (-) True G157255
TU232817 lncRNA downstream 402342 12533758 ~ 12533979 (-) True G157224
TU232815 lncRNA downstream 406828 12524479 ~ 12529493 (-) True G157222
TU232998 lncRNA upstream 88981 13029866 ~ 13040397 (-) True G157349
TU233002 lncRNA upstream 122769 13063654 ~ 13063904 (-) True G157353
TU233007 lncRNA upstream 162226 13103111 ~ 13103551 (-) True G157357
TU233004 lncRNA upstream 164876 13105761 ~ 13106920 (-) True G157355
TU233005 lncRNA upstream 165568 13106453 ~ 13107193 (-) False G157355
XM_043224260.1 mRNA downstream 5508 12911070 ~ 12930813 (-) True LOC122328520
XM_043225364.1 mRNA downstream 125752 12771790 ~ 12810569 (-) True phc2a
XM_043225312.1 mRNA downstream 211270 12674819 ~ 12725051 (-) False ephb2a
XM_043225311.1 mRNA downstream 211270 12674819 ~ 12725051 (-) True ephb2a
XM_043225313.1 mRNA downstream 262502 12665001 ~ 12673819 (-) True lrrc38a
XM_043225087.1 mRNA upstream 126442 13067327 ~ 13080224 (-) True spsb1
XM_043225300.1 mRNA upstream 182563 13123448 ~ 13128638 (-) False ca6
XM_043225299.1 mRNA upstream 182563 13123448 ~ 13128638 (-) True ca6
XM_043224557.1 mRNA upstream 435559 13376444 ~ 13401670 (-) True noc2l
XM_043224798.1 mRNA upstream 495657 13436542 ~ 13442457 (-) True LOC122328822
TU232479 other downstream 1011671 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 1134689 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 1189701 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 1190926 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 1193518 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 200193 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 339371 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 1386081 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 1640209 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 2406532 15347417 ~ 15474377 (-) False magi3a

Expression Profile