RNA id: XM_043224196.1


Basic Information

Item Value
RNA id XM_043224196.1
length 3748
RNA type mRNA
GC content 0.47
exon number 5
gene id wnt10b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15984905 ~ 15991565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCACGATTGTGACATGCAGCTTTAAGAATATATAAAGTTTGACAGGCCTTGCTGTTTTTTCGTCGTGTTTAAAAACAAGCGCCTCAGGCGAAGTTCGCCCACCCTGACGGcgccccctcctcctcctccttctcctcagTGACATACACGCTCCCGTCCCAGGCTTCATCAAATGCTGCTTGCTCAACTCCCCGCTCCTCACACAAACAATTGAACTCATTTCCAGTTGCTCTCCAAAGCGATCCCACAGGTGTTTTAATGTCCCGTCGAGAAAAGCTTTCGGCGCAATGGAGTTACCCCACAGACAGTGTTTGGGACGAGTCCTGATTGTGACTGCAGCGCTTCTGTCACCTGCGTTCACGGTACTGGGCAATGACATCCTTGGCCTGAAGGTGGCAGGAGAGCCAGTGCTTACCCCCAACGCAGTGTGTTTACGACTGGCAGGCCTGACCAAAAAACAGatgcgtttgtgtgtgcgcaGCCCTGATGTCACAGCCTCTGCTCTGCAGGGCATTCAGGTTGCTATTCACGAATGCCAGCACCAGCTCAGAGACCAGCGCTGGAACTGCTCCTCCCTGGAGAACCATGGCAAGTTGCCCCATCAGAGTGCCATTCTCAACAGGGGTTTCCGAGAGAGTGCCTTCTCGCTGTCGCTGCTGGCGGCAGGTGTCGTGCATTCGGTGGCCTCGGCCTGCAGCCTCGGTAAGTTGCGCGGGTGTGGCTGCGAGGCTAAACGTCGCCTGGATGATGACAAAATCCGACTCAAGTTAACCCAGCTCCAGCTTCAGACTTTCCAGAGGAGCGGGGTGTCCATTGCAGGTGCAGAGAACACACCTGAGTTGGGATCGCTCCATGGCAGCCTGCCGGCCGATCTGCACTCGTCCCACCCTATCAGTCTCCTCAAGCCCCTGCCGGATGAGGTCACGCCGCTGCAGGACACCTGGGAGTGGGGAGGCTGCAGTCACGATGTGCGTCTTGGTGTACGGTTCTCCAGGGATTGGTTGGATTCCAGAGGATCTCCTCGCGATATACACGCTCGGATGCGGATTCATAATAATAGAGTGGGCAGACAGGTAGTTACTGACAACATGAGAAGAAAGTGCAAGTGTCACGGCACATCGGGCAGCTGCCAGTTCAAGACCTGCTGGTATGTATCTCCTGAATTCCGGCTCGTGGGATCACTGCTACGGGAGAAATTTCTGACCGCCATCTTCATAAACTCTCAGAACAAGAACAACGGAGTATTCAACTCTCGAACTGTTGAGAGCCCCGGCTCGGACCAGCTCAGAGGCCGTCGGCGGAACATTTCCCGTGAGTTGGTGTACTTCGAGAAGTCGCCTGACTTCTGCGACCGTGAGCCCGCAGTGGATTCGCCGGGCACACAGGGGCGCATCTGCAACAAGAGCAGCCCCAGCATGGACGGCTGCGGGTCGCTGTGCTGCGGTCGAGGGCACAACATCCTCAAACAGGCACGCAGCGAACGGTGCCACTGCCGCTTCCACTGGTGCTGCTACGTGCTTTGTGAGGAGTGCAGGGTTACAGAGTGGGTTAATGTGTGCAAGTAGCCAACACATTTTCATCCAAATCCTCATTTCTTTTTTGGACCGGGAGACAACAACCTGTGACTGCCTGTGTGTTTTGCTCTCCTACAGAGTGTCTGTTTATCCATTTCTCTCCTTCCTTCATCATCTGGGATCCATTTGCGTTGTGTTGCTGTTGTTATGTTCAAAATGCCAAGTCAGAGATTGAGGAGGAGGTGACTCatgtcatttgtctttttttcctcgCTTGGAATCTTCAGCCTCCAGAACCAAGCAAATGGCCCGAACGCCATCTGCACTTCTCCAAATAACGAGGCATAGCAGCAGGAACGAATTATTCCTGAGAAATATCGGCACTGCTACggtctacttttttttttttttttttttttcatttaaaaagtgcacttaaTGTATATTCCTTACTTTGGCAAAATGTTTTGAGAAGTTGTAATCTTTCTCGATGGTGAAATACCATCATAGTAGGGCTGAGGTTTCTGAAACACTGTATCTTGCAGTATTATGATCTTTGCCCACATTGATCACGAAGAATCAATGGCTGTGATGATTGAAAGGAACGTCCCAGTGCCTTTTATGAGGTTTCATAAGATGTCGTAGAGAAAACTCTCCTAAGTCTGGAGTGAATCTTGGCCATCGACTGAGAATGTGCCTTGTGTAGGGATCTGAGTTTAGTTGGTTTTTATGAAAACCAGGACAATTGTGAAGTTGATATGCTGTGTAACCCCATTCTAACCTTTATAGAGACAGACCAATCGGAAAACGGAGATGGATAGAGTGAAGGAAAGACTGGAGAACACTTGTGCCTCCCGTGGATTTTTtgcagctgattaaaaacagtcACATCTCATCTCATACTGCTGAACAATATTGGATGCCAGATGCCTTTGATGCAAGAATGGGAAGACATTCATACTCTCAagttaaactgtatttaaacagTTGCCATTACAATCATATTACAGTGAATCTGATGTATGcgatttttaaaacattactattGAGCAATCAGTGCTTAGGgaatcaaattaattatatgtataaattaactTTCATGTATTGTTGCATTTTGCATTCTTGagacttttgttattgtgatGTGATACAAGAAGAATTTTTGGTCAAGAAAACCTTGTGTGTAGGTTTTAGAACCAGGAGAAACCCTCTAAAACAGTGGAGGGGTCATAGATCAGCGTATTAGATATAATTCTTCTCttctggagattttttttttttttactgaatctGACCTCTCATAATGGGCAACAGGGATAGGTTTTCATAAAGAGTTTTATAAGCAGATTGAGGTATGAACCGATCTTATGGGATCAGCTGTCCAAAGTTGCACCATGTGCTGCTGAGTACTGTTTGTCCTTGTCTGTGAATCTGCAACTGTCAGAGACTGGACCACTGTGTGATTTCCTAACTAAATACAGGCGCACTTCTGATGTCTATGCTCTGTCTGACTTTTCTGAATGCACAACAATCACAAACATCTCAAGAATAAATGAGTTTTCTGTATGTTTCCTCACGAGACTCTGTAATGAGGATGCGCTGTGGCGGCTGTGGACTGAGTGAAGTGACCACCCACGGTCTGCTGGCTTTATCGAACTTACTTCTCGTGGTATTTCCTCTGGCAATAAAGATGGGAGCATAAGAGAACTAGAAAAAGAGTGGTGTGGAATGATAAAGCGCTGGATATCTGgtttgcatttctttattcCTTTATCATTTCACCCTGGAGCTGCTGCGAGAGGGAATTTCCTGTCGCTGTTTCTCCCATGTGTGAGACAGAGAAATTGGACAGCCATAGACCAAACCACCCCTCCACCTCCCCAACAAAATGCAGTGCAGCCAATCACACATACAAAGCAACATACTGACAAAATCAAGAATAATGACAACCAGACACTGCCACAGTTAAGACAGAAGGCCACAGAACTAAGACTGGGTCAGCTACTACACAGAAAGACAcatggatggttggatggataaATAGATGAATTATAGATAAACAGATATAGGTAGGTGGATAGATGAATTACAGATACATAGATATAGGTAGATGAATGGATTGGTAAATGAATAGATGGATAGGTGGATGGAGAGATGGAAGAATGGATAGATAGAAGGACGGTTGATAGATGGCTGGACGAACgaatagatggatggacggacagatagatat

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234357 lncRNA downstream 19142 15964753 ~ 15965763 (-) True G158227
TU234328 lncRNA downstream 171978 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 195574 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 267661 15699771 ~ 15717244 (-) False LOC122329227
TU234368 lncRNA upstream 16541 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 110060 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 126316 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 255451 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 363804 16355369 ~ 16358705 (-) True G158336
XM_043224109.1 mRNA downstream 1736 15978616 ~ 15983169 (-) True arf3a
XM_043224108.1 mRNA downstream 1930 15978616 ~ 15982975 (-) False arf3a
XM_043224950.1 mRNA downstream 9196 15966421 ~ 15975709 (-) False phf8
XM_043224948.1 mRNA downstream 9196 15966421 ~ 15975709 (-) False phf8
XM_043224949.1 mRNA downstream 9196 15966421 ~ 15975709 (-) True phf8
XM_043225433.1 mRNA upstream 18155 16009720 ~ 16019647 (-) False ikzf4
XM_043225432.1 mRNA upstream 18155 16009720 ~ 16019647 (-) False ikzf4
XM_043225429.1 mRNA upstream 18155 16009720 ~ 16019647 (-) False ikzf4
XM_043225430.1 mRNA upstream 18155 16009720 ~ 16019429 (-) False ikzf4
XM_043225431.1 mRNA upstream 18155 16009720 ~ 16018103 (-) True ikzf4
TU234273 other downstream 267655 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 267655 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 510528 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1395312 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1654121 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 16541 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 152268 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 249245 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 366087 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1185087 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile