RNA id: XM_043224205.1


Basic Information

Item Value
RNA id XM_043224205.1
length 8674
RNA type mRNA
GC content 0.50
exon number 37
gene id agrn
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13538953 ~ 13747172 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGAGGGGGGTGAGCAGAGGCATTCCTCGTTCCTCTCTCTATTCTTCTCTGTCTGCCGGCTGATGCTCGCGCGTTCACTCAGCGCAGATATGAGCGCAGATCGCGGTGAAGTTTGAAGAAGACGGAGAGCGGCGCGCGGTCGGATTATTATTCACATCAAACTTGCTGCACAACTCGTCCGGCGTTTGCGCTCAGAGTTGCTTAACTTTCTCTTTCATCCGTTTGGTTTGACCATGGGCACTTTTCGCAAAAAAGCGTTTTATTGGCCCGTTTGGTCgcttgctgttgtttttgtgcttttgagtcAGCGTTGTCATGGAAGTTGTTCAGAAAAGGAGCTGGAAAAACGAGAAGAAGAGGCGAATGTAGTTTTAACCGGGACTGTAGAGGAGATCTTGAACATGGATCCGGTGCACAACACTTACTCCTGCAAGGTCAGGGTATGGCGTTACCTAAAAGGCAAGACCATGGTGAACGGAGAGGTGCTGCTGGATGGAGGAAACAAGGTGATGATCGGCGGTTTCGGAGACCCCCATATTTGCGACAATCAGGTGGCCACCGGAGATACGCGCATTTTCTTTGTCAACCTGGCCCCCGAGTACATGTGGCCGAGCCACAAGAACGAACTGATGCTCAACTCGAGCCTGATGAGGATTACTCTCCGCAACTTGGAGGAGGTGGAGCACTGCgttgaagATCATAGAATGATCAATGCAGATAAACCTGTTCACTTCACACCGGCTCCTCCTCCTGATGGTTGCAGAGGAAAGCTGTGTGGATTTGGAgcggtgtgtgagagagacccGACTGACCCATCTAAAGGAGAGTGTGTTTGTAAAAAGATTGTATGCACGTCTGTGGTGGCGCCGGTGTGTGGATCTGACTCCTCTACCTATTCCAATGAGTGTGAGCTGGAGAAGGCCCAGTGCAATACACAGAGACGTATCAAGGTGATGCGCAAAGGACCCTGTGCCCTGAAGGACCCATGCAGTGAGGTGACCTGTAGCTTTGGCAGCACCTGCATCCAGTCATCTGACGGTCTGTCCGCCAAGTGCATGTGTCCTCTGAGTTGCGAGAACGTCCCCAAGCACGTGGTGTGCGGCAGCGATGGCCTGGACTACCAAAGCGAATGTGAGCTCAACATGAAAGCCTGCGCCACTCAGAAGAACGTCCGCGTGCATCACCAAGGCCGCTGCGATCCTTGCAGTGACACTCTGAACAGCTTGAGTGTGGCCTGCCGGGTGAACCCAAAGACCTACAAGCAGTTTACCTTTGCCCCAGCCGATTCCTGCCCCCCTGACACAACGCCCATCTGCGCCAGCGATGGCCACACTTACGCTAGCGAGTGTCAGATGGAGCGGACGGCCCTGCAGAACAACCTGGAGCTCAAGAAGGTTTCTTCAGGCAGCTGCAAGGAGAAAGGGGGCTGCCCGAACGGTTGTAACTTCAACGCCATGTGTTTGCTGGAAAACGGAGAGTTTCGATGTTCCTGTGACCCCATACAATGTGACGGCACGTACAAGCCCCTGTGTGGAAAGGACGGAAAGACATACCCCAACGACTGCGAGAGGAAACTGGAAGAGTGCCGGACCGAAACAAACATACCCATCAAGCAACAAGGGCCCTGTGATCTTAACCTGGAGAGCCCCTGCCTGAAGAAGACCTGCGAGTTCGGAGCCGTGTGCGTGGTTAAGAACAGCGAGCCTGTGTGTGAATGCTCAGATGCCTGTCCGCAGGACCAAGACCCTGTTTGCGGCAGCGACGGGCACACTTACAGCAGCTCATGCCAAATGAAGGCCATGGGATGTGCCCTTCAGAAACAGATACAGATGCAGCACAAAGGACCATGTGCAGATGAGTCCTGCACCAACTGCTCGTTTGGCGCGATCTGCGACGCTCAGACTGGCCGGTGCGTGTGCCCCAAAGGGTGTTTGGAAACACGGCAACCCGTGTGCGGCAGCGACGGGGTGACGTACGAGAACGAGTGCAAGCTGAACGTGGAAGCCTGCACTAAACAGCGGGATCTCAGAGTGGTGGCTCATGGAGAATGCAAAACCTGTGGCAGCACTGTGTGTAGCTGGGGAGCGCGGTGCGTCCAGAACAAGTGTGAGTGTCAGCAGTGCACGGGTCAGCCGGTGAAACCCGTGTGCGGCAGCGACGGCAACACCTACAACAACGACTGCGAGCTGCGGCTGGCCTCCTGCAAGAAACAGGGGAAGATTGAGGTGGCCAAAGCTGGCGTGTGTGATGAAGACTGCGGTTCGGGAGGCTCAGGTTCTGGACCTGAAACCTGCGAGCAGGATCGTTGTCGGCGTTACGGCGGATCGTGGGACGACGACACGGAGGATGACCGCTGCATGTGTGACTTCACCTGTCAGACAGTGCCACGCAGCCCAGTGTGCGGCTCTGATGGGAACACATACACCAGCGAGTGTGAGCTGAAGAAGGCCAGGTGCGAGAAGCAAATGGACTTGCTGCTCCAGAGCCAAGGTCCCTGCCCAACTATCATATCAGCTCCTCCAGAGCTCGTCGCCTCCCAGCACTGTAGCGAAAGTGTTTATGGATGTTGCCAAGACAATAAGACCGCTGCCCAGGGTGTTGGACTTGCTGGGTGTCCTAGTGTGTGTCAGTGTAATCATTACGGCTCATACGGAGGCACCTGTGACCCGTCCAGCGGTCAGTGCTCCTGTAAACCCGGCGTCGGGGGACCCAAGTGCGACCGCTGCGAACCCGGCTTCTGGAACTTCCGAGGCATCGTTACAGAGAACATGAGTGGCTGCACACCGTGTAACTGTGATGGAGTGGGTTCGGTTCGTGACGACTGTGAGCAGATGTCAGGGCTGTGCTCATGTAAGCCTGGAGTTAAGGGCATGAAATGCAACGTGTGCCCCGACGGCAGCAAGATGGGAGCCAACGGCTGTGACAAAGGACCTGAGGCACCCAAGTCCTGTGATGAGCTTGCGTGCCACTTTGGAGCATCATGTGTGGAGATGAACGGAGAGGCTCACTGTGAGTGCCCGTCGCCAGATTGTGATGAGAAAAACAAGACCAAGGTATGTGGTTCTGATGGGGTCACCTACGCAGACCGATGCCAGCTGAGGACCATCGCATGCAGACAAGATAAAGAGATCACTGTAGAGCACTTAGGCCAGTGCAAAGAATCCATTGAGCTGACGGCCAAACCCACCCCCTTCCCAACCACCCACCGCACCACCCCTCCCACCGCTCACGTCAAGATCACCAAACAGCGCCATGGccacaccaccaccaccactacTTCAAGCATTCTTGAGGATCTGGACAGCAGGGTGGTGGAGGCATTGCCTCCACCGAGGGTGGTCGAGGCAGGAAAGTACTCCAGCTCTTTCACCACCCACCGCCCCACCACACTCAACAAACCACCTCGCACCTCATCCCCACCCCTGGACTCCAGCCCTTACTTTGATGAATCGGGCAGTGGAGAGCCCAGTGGGGACGACGAGATGGTGAGCGGAATGGAGGAGAGCGGAGAAGAGCCACTTGGTACAACAGTAGCAACTACCACTCTTCCCACAGCCGAAGAACGGTCTTCCTGTGACAACACACCTTTCGGCTGCTGTCCCGATGGGAAGACAGCTGCCATCAGCTCTGAGAATACAAACTGCCCCTCCACCATGCGTTTCAGTGGCTTCCTGCACCTGGATAAGGTAGAGGGTCAGGAGGTCTTCTACACGCCTGAGATGGAGGACCCCAAGTCAGAGCTGTTTGGCGAAACGGCCCGGAGCATTGAAAGCGCTTTGAATGAGTTGTTCCGTAAGTCAGATGTCCAGAAAGACTTCAAGAGTGTCCGTGTGAAGAATCTGGCCCCCAGCAACTCTATAATAGCCTTTATCGAGTTTCACTTTGACCCAGACACAAGGTTCGGTGTGGAGGATATTGAGGGAGCCCTTCTCAAACAGCTCAAGGCATCTAAAGACACTGGTATCGTTGTGAAGAAGCCTGAGGAAGAGAACATCCGCATCACCACCTATGGACTTTCAGCCATTCCTTTCTTCACCACTACCACCACCACCGTAGCGTCAGTCACAACTCCCACCACCACAACGCTGTCTCCCACTTCTGCATTTACCACTCTCCATCCGACCACCACCAGACGACCCTTCACCAGTCGAAGGACCACCACATCCTCCCCAGCCATCACCACTCCATCCAAGCCCCTCACAACCACAGGCTCACTGAAGAAGAGGCCATGCGACTCCCAGCCCTGCCGTCACGGTGGAACCTGCGAGGAGGAGGACAACGACTTCACCTGCATCTGTCCtgcaggaagaggaggagctgTGTGTGAGAAAGTTATAAAGTACTTCATACCATCCTTTGGTGGCAAGTCTTACCTGGCTTTCCGAACCATGAGGGCTTACCACACTGTGCGAATTGCCATGGAGTTCAGGGCTTCGGAAATGACAGGGATATTGCTGTATAATGGCCAAAAGGGCAAAAAGGACTTCTTGTCTCTGGCACTGGTTGAAGGACATGTGGAGCTCAGGTTTAACACTGGTTCTGGGACAGCTTCAGTGACCAGTAAGGTCCTGGTCAGACCAGGTCGCTGGCATCAGCTCGTTGTAGTACGTAACAGGCGTAACGCCATGCTGAGCGTGGACAATGAGCCCAGCGTTGAAGGACAAAGTCCCCCAGGAACAGATGGACTCAACCTGGACACAGACCTTTTCATCGGAGGAGTGCTTGACGACATGATACCAGACGTAAAGGATAGGACGTCAGTTTCAACAGGCCTGGTGGGCTGCATCCGCATGCTGGACGTCAATAACATGTTCTATAACCTGCAAGAGAATAGCGACAACATTTTGTACGGCTCTGGCGTGGGCGAGTGCGGCAACAATCCTTGCATGCCGAACCCCTGCAAGAACGGAGCCTCCTGCCAGGTCAAAGAAGCTGAGATGTTCCACTGCAAATGTGTCAACGGCTTCTCTGGTCCAACCTGTGCCGACGCCCACAACCCTTGCGACCCCAATAAATGTCACCCGTCATCACGGTGCCAGGTCCTTCCGGAGGGAGGTTACAAATGTGAATGTCCAATGGGACGTGAAGGCAAGCACTGTGAAAAAGTGTCAGACAAGGGAGGTGCTTTTATTCCTTACTTTACTGGAGATTCTTTCCTGGAGCTCAAGGGTCTTCATCTGTATGGCCAGGATCTGAGGCAAAAGTTCAGCATGACTGTGGTTCTGTTGGCCAATGACTCCAAAGGCATGATCTTCTACAACGGTCAAAAGACTGACAGCAAAGGAGATTTCATTTCTCTCTCCCTGAATGATGGTATCTTGGAGTTTAGATATGACCTGGGCAAAGGGCCAGCTGTCATAAGGAGTAAAGAAAAAATCAAGCTAAACGAATGGAGCACAGTGAATCTGGAGAGGGCCAGTAGAAAAGGAGAGATCAGCATTAACGGCAAAGACCCCGTCAGGGGAGAAGCGCCGAATCAGCACACAGATCTTAATCTGAAGGAGTCGCTCTTTGTGGGCGGAGCCCCTGATTTCCGCAAAGTAGCCAGAGCTGCTGCGATCAAAGATGGCTTCAAAGGGGCCATTCAGAAGATTACTCTGATGGGAATTCCAATCCTGAAATCTGACAACGCCCTTCACTCCAGTGATGTGTCCATGTATCCCTACCACCCCTGCTCCAAAGATGTTTGTGAGAACGGAGGCCGCTGCAACCCTATGTTGGATAGCTATGAGTGCGTCTGCCGCCACGGATTCACTGGACAGCACTGTCAGGATGCAATAATCGAGAAATCCGCAGGAGACACCGAGGCCATCGCTTTCGATGGTCATACATTCATCGAATATCACAACGGAGTCACCAAGAGTGAGAAGGCCCTGCTGGTGAATAAATTTGAACTGAGCATCAGGACCGAGGCTACTCACGGTCTGATTTTGTGGAGCGGCAAGGGAGTGGAGCGATCAGATTACATCGCCCTTGCTATTGTGGACGGCCGTGTGCAGATGACCTATGACCTCGGCTCCAAGCCCGTGGTGCTGCGCTCTTCTGTACGGGTCAACACCAACCGATGGATACGAATAAAGGCCAGCAGAGCGCTCAGAGACGGCTCGCTGCAGGTTGGTAATGAGGCAGCTGTCACTGGGTCATCACCCTTGGCTGCCACACAGCTGGACACAGACGGCGCTCTCTGGTTGGGTGGCCTGGAGGAGCTGTCCGTAGCTCGCCGGTTGCCCAAGGCTTACAGCACAGGCTTTGTTGGCTGCGTAAAAGACGTGATAGTCGACGGGGTGGAACTACATCTGGTTGAGGACGCCTTAAACAGTCCCAAAATATTACACTGTTCTGCCAAATAGTCTGGCACCACGTTCCTCCCAACACCATGTCTActgctgtaattatttttctattttttatatacttttctttGCCTTTTATATTGGAaaaattacattgttttaattataatttttttttttttttttttttttttttgtttccccaTCATTGCGTCCAACCATAATCAAGTCACCAGTCAGCGAACACGGTGTCACAAGACAAGCAAAAAGTCGtattacatctgtcctgtttctATGACAAACAACAGAACATGTACTTGCTCATTACTTGAACAGTGGCGGATGAGGTTGGTGCTGTTTGTGCCGTCTGGATTGCCTTCTCTCGGTGCCATAGCTTGCTGTCCAGCATTCACCATACATTCCTCTAAGCTGTTGCTGCGGTCCATTactacgtttaaaaaaaaaaaaaaaaaaagactctccGCTTTCTTTTTCGACACGACAGAAAAAACACTGAGCAAGACTATGTACGATATTCCTCATTTATGATACCACTAACAAGGACGAAAGCTCGAAACGTGGAGCTTTTGAACCCCGAACTGATAGTAGCTGACGTAACATTTAGCATTCCTCAAAAttcaccatgtttttttttttttttttttttttcccatgcgAACATCATTGATCTGTGAGATGTAATAAATAGTAACGAAATACATGAGACTGTGAATTTTGAAGATGCTATTTTTTGTTGCAATCATTCGTCTCATGTGTTGTGCATATCTAAAGAgcaattacatatatataaatatactatatgaCCACTTGTTGCATGCATCTTTTTAAGTGTTGCGTTGATTTTGCCTTGGTTTTCTTGATCTTCGTCATTCCATTCAGGGCAGAAATGTAGCTGACTACATTGCAATCTTGACATCTGATCATTCAAGTTGGGAGATattgaaattttatatatataaatatatagatatatatgctATTTGTCAATCTGGACTTGTGTGTGTGGGCGTGTTGGAAAAAAAACGGTTGTTGCAACAGCTCAACATTGGGAGGCGCTGTAACACAGGAAGAGATGAGAGACTCAAAACACATCAGGTGGACAAAAACAGCATTGACATTCTTGGCATGTTCCGTCACCGAACAAAAATCATGtattcactgcattttttttctttttctatcgtttatcaaatgaaaatgtggcTTTAAAATGCTGCCACCacttgctataaaaaaaaagggatgaTGTATGTAGACCCCTTGCATCCAATGACTGTGGCCCCCATAACAGCTGTTTATGTTCAACGGTAACCAGTGAAAATAGTAATGCATGGGTTTGTCAAGTTAAAATGGTTTTTGTAACCTGTTCCAAGACAAATGCAATGCCGTGGTGCTGTTTCGGTGTAAGAGGTATTTGAGTCTGATACCAGATGCTTTGCAATATTCCATTAGAAATATGCCTGTTCGGggtaaaatatcatcttttttttttccccctctttttttAACGAACCCTGGAACATGCAAAATCGTAATTGTCATCATGTACAGccctgtgatttttttatttttttttcaagtgtaaATTTGTCACTGAggttttgttttagtattatacACTGGAAGCGAGTTTGGCATATCATGAACACGGGGTGGGATCCGGGGGTTTAAGACGGAGACCGGGAGCCCTTCGTTACTGCACGAGCTGTATGGACCATCCGCCCCTTTTTTTAGCATAGCGTCCTCACCTTCACTTTTCCAGCGGACTGGATTTTTGATCTCTTTTGTATTAATGGGAGTTATTTTTTGACATCCTCCTTCCGGTAGCTTTGCTCTCGAGCGACGAGGCTCATGGCGAGAACCGCCGTGGAAATCTGCTGTGTGAATGGAAACTGAGAAATGCCTTAAAATCATTCACCGTTCATGGGTGACAAAAGTTCATGTCCATATTGTTCTGTGCTCTCACCTTAGCCAGTACATTAGCCTCATTCCCATCgtgtaaattaattcataaatgttaataattatattaataatgcttATGAGAATTTCCAGAAGGCCTCAATAATAGTGGTTCTGGACTCtacaaaaatactatttactgtacaaatactATTTTCAGTATCTTATTTATGTCTTAAAAGGATTCTCAGTCTGGCATTTGTAAACTACTGTTTTGATTGAACTCGATCTGATGGGCAGTGCACAGAATGAGAGGCATGATGTTACCATTACTAACTTTATTACTTGTGTCTTGTGTTCCAAccaccataaaataaaatgtaaaacaaactgACCTGACTTTCTGTAACATTTACTCCTGATAATGTCTGTGAATAAATCCCTCCAGTTCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233089 lncRNA upstream 43577 13493586 ~ 13495376 (+) True G157408
TU233085 lncRNA upstream 44476 13411670 ~ 13494477 (+) False G157408
TU233091 lncRNA upstream 97002 13438275 ~ 13441951 (+) True G157410
TU232971 lncRNA upstream 423779 13114958 ~ 13115174 (+) True G157329
TU232968 lncRNA upstream 431996 13106460 ~ 13106957 (+) True G157326
TU233111 lncRNA downstream 54248 13801420 ~ 13882959 (+) True G157417
TU233118 lncRNA downstream 111793 13858965 ~ 13862206 (+) True G157423
TU233174 lncRNA downstream 150659 13897831 ~ 13901092 (+) True G157459
TU233151 lncRNA downstream 191271 13938443 ~ 13939354 (+) True G157446
TU233186 lncRNA downstream 192234 13939406 ~ 13939898 (+) True G157471
XM_043224799.1 mRNA upstream 103086 13422930 ~ 13435867 (+) True plekhn1
XM_043225435.1 mRNA upstream 121699 13402017 ~ 13417254 (+) True klhl17
XM_043225436.1 mRNA upstream 121699 13403259 ~ 13417254 (+) False klhl17
XM_043224555.1 mRNA upstream 162652 13321531 ~ 13376301 (+) True samd11
XM_043224633.1 mRNA downstream 4574 13751746 ~ 13778674 (+) False ptpn11b
XM_043224632.1 mRNA downstream 11544 13758716 ~ 13778674 (+) True ptpn11b
XM_043224634.1 mRNA downstream 11648 13758820 ~ 13778674 (+) False ptpn11b
XM_043223986.1 mRNA downstream 56942 13804114 ~ 13824537 (+) False ttll10
XM_043223988.1 mRNA downstream 67049 13814221 ~ 13824537 (+) False ttll10
unassigned_transcript_2622 other upstream 2020417 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2023082 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2025107 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2026255 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2361920 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 307192 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 309513 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 552529 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 936818 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 964975 14712147 ~ 14714533 (+) True LOC122328914