RNA id: XM_043224214.1


Basic Information

Item Value
RNA id XM_043224214.1
length 2706
RNA type mRNA
GC content 0.48
exon number 2
gene id sp5l
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16189431 ~ 16192678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTTTTCCCTATAAAGAGAAGATGCAATCCGACCGCCTTTGAAATGATCCTCAGGACTTATTGCGACAGGCCCTCAGTCGCACTTCAAAAGGAACAGTCCCGGTTTGAAAGCCGCTGCTTTTGAAAAGGGGACCCAGAAAACCAGGAGCGAGAGCGCGAAGTGGTCAGAGACTCTTACAACCGATAAAGGACAGGAGCAGGAAGAGAGAATCGAGGGATTATTGATGATCACTGTATTTACACTCATGCACCGGTAACCTGGTTGTGTAACGGGGTCAGTCCGTGAAGGATCTTTGCGCGCTCTGACTTTGGCACGGTTACGCACTGCGCGCCGCGCTTCACGCAGGTGTGGATATATCTTGAAGCTCCCGCACACATGGCTGCGTTAACCTTATCCAGAGCGGACAATTTCCTGCACAATTTCTTACAGgATCGTACTCCCAGCTCCTCTCCAGACAGCGGTCCTAACACCCTTTCCTTTTTGGCCACCACATGCAGTCAGGCTTGGCAGGAAGGGTCTCAGCTCCCTTACGAGGGGCCGGTGGGCTCCGCTTCCAGCATGTTTCAGCTCTGGAGCAATGACGTGGCCCCGAACTCCAGTTTGAGCGCTCACCAGATGACCTTCACCGTGCCCAAAATGCAGTTCCCCGGCCACATGCAGCCCACCCTGGGCTCGCACTCccatcatcaccaccatcaccaccatcaccaccacGAGCTCCCCCTCACCCCTCCAGCCGAGCCTCCGTCCGCCTACTCGTTCGACCTGTCTCCAGTGAAGATGCTCTCCTCCCAGGCACAGGGGAACGCGTCGTACTACACGCAGCACAACGCTGTGGGTCAGAACTTTCCTAGCTTCCTTCAGAACGCTTCAGGAAGACCTCACCTGCCAGGTGGACACGTTGAGGACGGCCAGCAGTGGTGGAGTCTCCCTCAGAGTAACAGCGCACCCTCCGGACACCCCTTCTCTCTGGGACGCCAGCTGGTTTTGGGCCACCAGCCTCAAATCGCTGCTCTTCTGCAGGGAACCTCGAAAGGTCTGCTGAGCTCAACTCGCCGCTGTCGCAGGTGCAAGTGCCCCAACTGCCAGTCCACGGGAAACGGAGGTGCTGCTCTGGAGTTCGGGAAGAAAAGACTACACATTTGTCACATTCCGGATTGTGGCAAGGTCTACAAAAAAACCTCTCACCTGAAGGCTCACCTGCGCTGGCATGCCGGCGAGCGGCCCTTCATCTGCAACTGGCTCTTCTGCGGAAAGAGCTTCACCCGCTCAGACGAGCTGCAGAGGCATCTTCGCAcgcacaccggagagaaacgcTTCGGCTGTCAGCAGTGTGGGAAAAGGTTTATGCGGAGCGATCACCTCTCCAAGCATGTGAAGACCCACCAGAGCAGGAAGAGCCGGTCCAGTCAGCCTTCTCAAAGTGGGACCGATTCACTGCTAAGCAACATTAAGAGAGAGTAAGGGATGCTGAATGCAAAAGAACTTGCTGTAGTATCAGGAATGAATCCAGAGACCCTTTGAGGCTATTTGCGTCATCTAAAATCTTTTATAGAAAAGGTgcaattgttaaaaaatacaatatatattccAAAAAGCAATAGCAGCATGGGCCTGTTTTGAAAACACTGGAGCAAGTGAACACCATGCCGCACCGAAATTGATCTTTGAGACTTTAAAGAGAATTTAGGTCACAGTGGACGTGAAAGAGCAGAAGAAAGTGACATTTTTTACGGCTCTGGATGCAAAGACTTTTTATGACCAAATTTGCCcttgcacatttatttaaagataattcAATTCCACTAACAGCACAATCAAAAGTATTTGTCACATggtgaaaatgtcatttgtttacattttgttgttgctttctCTAGTTTTTAGGGAAAATTGATGCcttatattaaaatgagaagCTCTGGTTGCGAAATTTGCCAACATTATTCCCTGACAGATCACTGTAGGTCTTGTTTCCTTGCAGAGAATGGCACTGCTATAAATCTATTTCACTCTTAATCTAAATAGTTTCAAGACATGAACcaaatgtatataatgtttatatagcGCACAGTTCTATAAAGACCAgcatgtgaaatattaataaacgcaAATAACTGTGCAAATCGAAATCTCGTGCTTCGTTTTGTTCATTCCTTCGCAGCATTTAATGCCTTGTCAAGCGCACTTAGTGTATTTTAACAGATGTGTGAAGTTCAGCAAATGGCTAATGTTAAATCTAACACTGCATGTTGGACCtcagcattttacatttattctaatGTTAATGTACTGGCATTCAGGATGCTAATTTAAGGTGGCCATTGTTTCCGAGGTGTCAAGGAAGCACTTAAAGCAAAGACAAATGACTGGAGAGTCTTCAGACACTTTACAGTTGTCAGTAAATAGTCGGGCCATTGATGAGAACAGTGGTCTGACCTTCTCCCGTCAAGTTCACAGTCATGTTGTCTCGTAATGGCCGGTGTAAATAACAGACAACCGTCACTGAGGATAGCGCTCTACTGGAGCTCACTGTGAATGGACCCCCGGCTGTTTATATCCCACTGACTGTGACAGAAGTCGCTTTGATTTGGCACCTTTGTGATAGTGAATGCTCACAAACCCTCTTCCCCCATCTGTGTGTGCAAATGAACCCTTTGCTGCTCAAGAATGCCTAGAATGTGACTTAAACAGAGACAAATTA

Function

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0030902 hindbrain development biological_process
GO:0030903 notochord development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234428 lncRNA downstream 71217 16117881 ~ 16118214 (-) True G158284
TU234426 lncRNA downstream 87217 16101625 ~ 16102214 (-) True G158282
TU234368 lncRNA downstream 180516 16008106 ~ 16008915 (-) False G158231
TU234357 lncRNA downstream 223668 15964753 ~ 15965763 (-) True G158227
TU234328 lncRNA downstream 376504 15812281 ~ 15812927 (-) True G158208
TU234492 lncRNA upstream 54338 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 162691 16355369 ~ 16358705 (-) True G158336
TU234531 lncRNA upstream 224247 16416925 ~ 16439280 (-) True G158353
TU234534 lncRNA upstream 228841 16421519 ~ 16439280 (-) False G158353
TU234561 lncRNA upstream 231286 16423964 ~ 16424362 (-) True G158377
XM_043224262.1 mRNA downstream 63020 16118392 ~ 16126411 (-) True ankrd33aa
XM_043224814.1 mRNA downstream 74147 16102408 ~ 16115284 (-) True acvrl1
XM_043225249.1 mRNA downstream 89672 16083732 ~ 16099759 (-) True acvr1ba
XM_043224111.1 mRNA downstream 166061 16021317 ~ 16023370 (-) False dnajc22
XM_043224110.1 mRNA downstream 166062 16021317 ~ 16023369 (-) True dnajc22
XM_043225544.1 mRNA upstream 30131 16222809 ~ 16234574 (-) False b4galnt1a
XM_043225543.1 mRNA upstream 30131 16222809 ~ 16234574 (-) True b4galnt1a
XM_043224075.1 mRNA upstream 48384 16241062 ~ 16243281 (-) False tac3a
XM_043225148.1 mRNA upstream 66397 16259075 ~ 16331672 (-) True znf385a
XM_043225267.1 mRNA upstream 148768 16341446 ~ 16344687 (-) True neurod4
TU234433 other downstream 19597 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 180516 16008106 ~ 16008915 (-) True G158231
TU234273 other downstream 472181 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 472181 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 715054 15347417 ~ 15474377 (-) False magi3a
TU234490 other upstream 48132 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 164974 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 983974 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 1146589 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 1853260 18045938 ~ 18047878 (-) False march9

Expression Profile