RNA id: XM_043224217.1


Basic Information

Item Value
RNA id XM_043224217.1
length 6326
RNA type mRNA
GC content 0.46
exon number 18
gene id clstn1
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9029720 ~ 9062901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACAGTCGTGACGTCAGCCCGTCACCGCTCCCGTTGGATGCAGCTGCGGagcggcgagagagagagactgaacgGTGATTGAAAGAGAAGAGAGCTGAACGGCGGTGGCGGCAGCCATCTTAAAACTACCGCACTAATCCGAGATATACATCCTCTGGATATTTCTGCAACGCCGAGCGTAATCAGATTTTACCGGGCGAGAGGAGACTGAATAACACCGTTTAAATCGCTCGCTGTTTTTATAAGGAAGACGGGATGCGGATCCGTGAGGTGAAACCTTTCGCTTCTGCGGTCGGTCTGCTTTTAGGACTAATATGCGCGGTGGAGGCAGCCAAAGTAAATAAGCACAAGCCATGGATTGAGACCACGTATCATGGTATCGTAACGGAAAATGACGACAAAGTTCTCCTGGACCCTCCGCTGATAGCCTTGGATAAAGATGCCCCGTTGCGCTATGCAGAGAGTTTTGAGGTGACCTTCACCAAAGAAGGTGAGATCTGCGGCTTCAGGATTCACGGGCAGAACGTGCCGTTCGAGGCGGTGGTGTTGGATAAGTCCACTGGCGAGGGTGTGATCCGGGCCAAGGATAAACTGGATTGTGAGCTGCAGAAGGAGCACACCTTCACCATCCAGGCCTACGACTGTGGAGAGGGACCTGATGGCAGCAACATGAAGAAATCTCACAAAGCTACCGTCCACATCCAAGTGAATGACGTGAACGAGTATTCACCGGTGTTCAAAGAGAAGTCCTACAAAGCCACAGTGATCGAGGGCAAAAAGTATGACAGCATCCTGAAGGTGGAGGCCGTGGACGCTGACTGCTCTTTCCAGTTCAGTCAGATCTGCAGCTATGAGATTGTCACCCCCGATGTGCCCTTTACCATTGACAAGGATGGCAACATCAAGAACACAGAGAAGCTGAACTACAGCAAGGAACGCATGTACAAACTCACCGTGACCGCATACGACTGTGGTAAAAACCGTGCGTCTGAGGATGTTCTTGTGAAAATCAACATCAAGCCCACCTGCAAACCAAGCTGGCAAGGATTTAATAAAAGGATTGAATACGAGCCTGGTACAGGCAGCCTAGCTCTGTTCCCCAGCATGCACCTGGAGACCTGCGAGGAGCCAATCACCTCCATTCAGGCCAGCATCATGCTGGAGACTAATCACATCGGCAAAGGCTGTGACCGCGACACATACTCTGAAAAATCCCTGCACAAGCTGTGCGGTGCCAGCGCTGGCACTGTGGAGCTGTTGCCTGCTCCCAGCAACACTGCCAACTGGACCGTTGGCTTGCCCACTGACAACGGCCACGACAGCGACCAGGTGTTTGAGTTCAACGGCACCCAGGCCATCAAGGTCCCTGAGGGTGTGGTGAGCACCACCCTGAAAGAGCCCTTCACCATCTCGGTGTGGATGAGACACGGACCCGGGGGCAGGGAGAAGGAGACCGTGCTCTGCAACTCTGACAAGACTGAGATGAACAGGCACCACTACTCTCTGTATGTACACAACTGTCGTCTTGTGCTGCTGCTGCGTCAGGAGCCTACCGAATCAGAGAATTACAAACCAGCTGAATTCCACTGGAAACTCGATCAAGTGTGTGACAAAGAATGGCATCACTACGTGTTGAACATTGAGTTCCCAGCAGTGACTTTGTTTGTGGATGGTGCCACCTTCGAGCCCTTCCTGGTCACGGAGGATTACCCTCTGCATGCCTCCAAGATCGAAACCCAGCTCACCATTGGCGCCTGCTGGCAAGGTGGCAGCTCCCGCATGACTCAATACTTTCGGGGCAACCTAGCTGGACTTATGATCCGCTCCGGCAAACTGGAGAACAAGAAAGTTATCGACTGCCTTTACACCTGCAAGGAAGGTCTTGATGTGCAGCTTCCAGAGGAAGTAGCCTCTGCTGTTAAGgTGGAGTTTAATCCCAACCAGTCTTCTCTAAGCCTGGAGGGCGATGACATTGAGAGCTTTGAGAAGGTCATGCAGCACATCTCATACCTGAACTCCCGGCAGTTCCCCACCCCAGGGATCCGCCATCTGCGTGTCTCCACCACTGTCAAATGCTTCAATGAGGAGACGTGCATTTCCGTGCCTGACTCTGAAGGCTATGTGATGGTTCTCCAGCCAGAAGAGCCAAAGATCAGCCTCAGTGGAATTGACCATTTTGCCCGTGGAGCAGCTGAATTTGAGAGCACTGAGGGCGTTACGCTCTTCCCTGAGCTGCGCATCGTCAGCACCATCACCCGTGAGGTGGAGGTGGAAGCTGAGACCGAGGCCGAAGGCGAGGATGATCCCACAGtgcaagAGACGGTGGTATCTGAGGAGATCATGCATAATTTGGACACGTGTGAAGTGACTGTGGTGGGAGATGAACTGAATGGAGATCATGAGAGTTTGGAGGTGGATCTGGCTCAAATCCAGCAGAGAGTTCTGGAGATGAGCTCTTCTAACGTGGGCATGGTCATCACAGGGGTTAACACCATGGCGAACTATGAACAGGTCCTGCATCTGATCCGCTACAGGAACTGGCACACAGAGGCATTGTTTGATAGGAAGTTTAAACTCGTCTGCTCTGAACTCAATGGCCGCTACATCAGCAATGAATTCAAAGTCGAGGTCAACGTGATCCATACAGCCAACCCCATGGATCATGCTAACAACGCTATGGTACAGCCTCAGTTCATCAACCAAGTACAGCACGCTTCAGTGGACCTGTCTGGACACAACCTGGCCAACACACATCAGGCCTCAGTTGTCCCAAGTGCTGCCACCATCGTTATCGTCGTGTGTGTGAGCTTCTTGGTGTTTATGATTATCCTGGGCGTCTTCCGTATCCGTGCTGCCCACCAGCGCACCATGAGAGACCAGGAAAACGGCAAAGAGAATGAGATGGACTGGGATGACTCTGCCCTCACCATAACCGTCAACCCAATGGAGACTTATGAGGATCAGCACAGCAGCGAAGAGGAaggagatgaagaagaagaagagagcgAGGACGGAGAGGAGGAAGACGACATCACCAGTGCGGAGTCAGACAGCAGCGAGGATGAGGGCGGCGAACAGGAAGACCAGCAGGGTTCGAACAGACAGCAGCAGCTGGAGTGGGACGACTCCACCTACTGATCCTCCTGagcacacactacacactacttaccaacacacaccacacacacacacacacgctctcacacagtGACAAATCCACCCATGTCACATCCCTCTGCCAATAGGGACGCCCATGTTCCCCCTACCTAAGGAGCCATGCGTAAAAAAAACGcggaaaacactgaaaactaaACGATTATACAATATATGTACAATATAGATGCGAATATATCCGGTGTCTGTCGTGACAGGTGTTGCAGTCCGCTTCATTTCCACCCGCCAAGGCTTCCCTATCGACATCTTATCGTGGTGGTATTCAGTGTAGTATAGTATCACAGCTATCTCAATACAAGTTCCTAATTTATTGAATCTTTTTCTGTCTTCTCCGAGGGAATCCTGGCCCGCGTTCGCATTTTCTTTCAGCTCTGTACGGACACATCCCTGCACTTTTTACTTTCAAGTTGAGCTTCGAGaatgattttaatgtataatcCTTGCACATTTAGGTTGATTTGCTACAGGAATTTTGAGGAAATTCACTTTATATTGCATGGCAAGATTTGCAATCATGGGTACGGAAGAAAACAACagctttttgatattttgtaaataagaCGAAACCATGTAATTAGTCGATGTGTGTTAGTGAAAGCCTAACCAGCGGTTTCCGTTATCTAAAAAGACACAGTGTCTGCTGTAGAATATTTATGTCAGATGCTCTTAGCATGTTTCAGAAACTTTCAGTAAATCTCATgctcgtaaaaaaaaaaaaaaaaaaaatgtccgcTTCACAGAGAGAAACCCATGACAGAGGCTGAGGTTTCTGTGGCAAAGTGTCGttcattttgtcttttctcttGGAGGTGGGTGTGcatcttttttgtttggttCCGTTCTGTTTCGTAGTGTTGGATGGGCGTAGAGTCGGTTCAGTGCTTTGGCTTTACATATGCTAATTCTAGCTGGGCTTGCAATGGCACAAATGCTACACCGaggctttaatgttttaattcagtGACGTTTTGGGGACTAACAAATCACATTCAGGTGATGAAtatacagttgttgtttttttcgcGTGGTACTGTATGTTGTACAGTTTAGGCACACCGCAGTTATTTAAGCCATTCTTAAGTGATAGTGCTTGtattttctgtaataaataaatagagacCAATTTGAATCACAGGACGCACTCTCATAACCCAGTCTGAATAACAATTACGACTGAAACGACGTGGAAAACGGGTGCGCTGGTGATTTATCGACAATGTGAGCATCGAAAGGTCTGTTGTGTACTGTTTTGACAGACCTCTATTGCTAAGTTGTATAACTTTAACTGAACAAAATTGCGTGGGGGGGAGgggttgtttttatttcatatatacctaattttgtattttaaagtgatttttcctttttttaatttttaaattcaggGTTAACCCGTGCTACTCATTTCAAGGCCCCTTAAAAGCATTACAAGGGCTATTTTGCCTATCACAGCGCATTAAAAGAAACGAAtttcaacttttaaagcataaaatatttttgcagtatgGCCGTTGGATTTTATTGTACATGGAACTGTACTGTAGAGTTGTGTAAagatatttgtttacatttggtaaacttttattccttttcggTGACGCTATCAATCTACTCCAGATTTGCAGGTCATTTCTCTTCAGAATCATGTCATAGTTTCATTCTCTTACTGTGATTGGACATTTCGGGACGCACCCCCTCCGAAAACGGTTAAGCCATTGGGGAAAATGATGTTCCGTTCCCGCTGGGCTCGAGGAAAAAGAATGTTAATTATTCAGGAGATTGTACATCGTTTGATTGTTTAGCCAAGACGGACGCGAAGCTTTAGGGTACTTCAttcagctgttttttgtttacatgcatgAATATTCTCTGTTTCAGGCCTAAGCTACAAGGCTCTGTTACGATTGGTGGTACGAATATAATTTTGTGTTACGTCAGAAAAGGTACAATGCGGGAAGCTGTCGAGAAGGTCTATTTTTGTGACCCATGAGAGAGCGACGGTTTTAGGTTTTGTTCCGTGTTTTGGTCATCGGGATCCCCCTCAAAATTGACAggactttttaaaaagagatcCAGAAATCAGCTGGTGGAGTTGTGGGAGTGCCTTTTGCCTATCACAGCGCATTAATAACACGACTAACCAAACACTCATCCATGCCATTTTAGTTGTTgcaattttctcattttataatgatttagtATATTAGATTTCTTTATAGGTACGGGGAagtgattttaatttgatttagattttctgtTAGGGATCAACAGCTAGTTTTATCAAGAGCGGACGTTTTAATTGTCCCGCATACAGTAGACGTCTTGTGTTCATGTTGATGTGTAGAGAAAAATAATAGGTCCATACTGTATCATCAATGAATATTGTACTAAATCATGTTTGAGGAAATCCACTTTCGAAAAGATGTACATTATTATAGGCAGCATATGTGGGTATGATATGTGTATAGTGAAAGGTGTATCTCCTGATAACGCTGTAGAGGGCAGCATGAAATTCACGAGAAGCAAATACATGATGACTCGTCACACAAACGTTATAGTCTCTCACAGTGTATTCTCGACTCGCGATGTAGACCATTCCATGAGACCAAATTTAGTATAATCAATGTTTGTACTGAAAAATCGCACAATTGTTTGTATCTTCCCTCCTTTCCCCTGATGCAAATATTCATCTGCAGGTTCTCAAGGGAAAAATCACGTGAATTGTATTTCAAACAATGTGATTTTAAGACGCTGGCGCAGAAACTTtccataataaagaaaaaaaagcagtctGTGCCGAGCGTGAACGGCTGCAGATGGTGGGTGTCTAATGGGGCATTGTCTTTGCATGTATAACACAAGATATAAATATTTCCTGTAACTGGCACATGGTACTGTGGGTTTGGAGTGGAGTAGATGGGAGAGGATACTACTGAATCAAAGATTATCTGTCTCAGATTTGCAGCCTTCAGTGGTCATTGTTCACgttttgattacttttatttttttgctctaGAAATGAAAACCGGGGGATGTTGTAGAACTGTTGGATGCTGCCTTCCAGCTCATTCACTTTTCTATTATTCAGAGGAATAATTATAGTGAAGTTGATGCTTGCTCATGAACAAAATAAAGGATGAGATGGGAATAA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230942 lncRNA downstream 400617 8628699 ~ 8629103 (-) True G155933
TU230786 lncRNA downstream 404078 8624926 ~ 8625642 (-) True G155825
TU230759 lncRNA downstream 496793 8526402 ~ 8532927 (-) True G155803
TU230697 lncRNA downstream 647113 8307279 ~ 8382607 (-) True G155759
TU230649 lncRNA downstream 852202 8176699 ~ 8177518 (-) True G155737
XR_006247890.1 lncRNA upstream 7483 9070384 ~ 9072944 (-) False LOC122329247
XR_006247891.1 lncRNA upstream 7483 9070384 ~ 9072938 (-) True LOC122329247
TU230977 lncRNA upstream 16632 9079533 ~ 9097263 (-) False ctnnbip1
TU230983 lncRNA upstream 90179 9153080 ~ 9153502 (-) True G155968
TU231000 lncRNA upstream 125612 9188513 ~ 9188897 (-) True G155979
XM_043224220.1 mRNA downstream 3290 9023008 ~ 9026430 (-) True nmnat1
XM_043224222.1 mRNA downstream 8639 9019526 ~ 9021081 (-) True LOC122328502
XM_043224686.1 mRNA downstream 10738 8999326 ~ 9018982 (-) True ube4b
XM_043224687.1 mRNA downstream 10739 8999326 ~ 9018981 (-) False ube4b
XM_043224249.1 mRNA downstream 32214 8957327 ~ 8997506 (-) False kif1b
XM_043225456.1 mRNA upstream 16631 9079532 ~ 9097302 (-) True ctnnbip1
XM_043225457.1 mRNA upstream 16631 9079532 ~ 9097274 (-) False ctnnbip1
XM_043224795.1 mRNA upstream 36372 9099273 ~ 9118072 (-) True pik3cd
XM_043224796.1 mRNA upstream 36372 9099273 ~ 9110079 (-) False pik3cd
XM_043224054.1 mRNA upstream 57971 9120872 ~ 9122731 (-) True foxl2l
TU230970 other downstream 103110 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 109995 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 109995 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 401329 8625758 ~ 8628391 (-) True G155827
TU230763 other downstream 477743 8545394 ~ 8551977 (-) True G155807
XR_006247818.1 other upstream 133326 9196227 ~ 9209964 (-) False ccdc187
TU231373 other upstream 738884 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 738884 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 769227 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 769227 9832128 ~ 9833682 (-) False zgc:153284

Expression Profile