RNA id: XM_043224227.1


Basic Information

Item Value
RNA id XM_043224227.1
length 3514
RNA type mRNA
GC content 0.54
exon number 9
gene id naca
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11068486 ~ 11075931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTATCAGCAAGAGCGTATCCAGAAGCAACTTCCTGCTGAGGCCGGAAGCAGAGCTGTGACATCAGAGCGACGCGGAGGTCAGAAGCCCTCTCTTACAGCCATCTTGGATCCTGTGCCCTGAACAATCCAGAATGCCAGGCGAAGCCACAGAAACTGTCCCTGTTACAGAGCAGGAGATGCAGCAGCCCCAGGCTGAGACGGCCACACCTGCTGCTGCGGCCCCTGCTCCCTCTCAGGCAAAGCCTAAAGAGGGCAAAACTAACCCCAAGCTGTCCTCTTCTCCTCACACCACCGCTCCTAAGCCAGTTCCTGCTGGACGCAGGAAACGCTCTTCTCTTTCTGCCTCTTCAAGCTCCCCTACCTCTCCTAAATCTGCCTCTGGCCCTCGTGCTACCCCTCCATGCTCCCCTTTGGCTGACTGTCCTGCAGCTAGGGAAGCTGAGCAGACTGCTCCCAAGGTGGTAAAGGCTGGCAAACAAGGGAAGCAAGAGAAAGCAAAGAATTTTAAACCTGCTGAACCTGAGCAAGCAACTCCCACTGCCTCTAAGCCTGCTCAGGCTCCTGCAGCAGTTGCAGCTGTGCCATCTCTTGCTATACCAGTACCAGAGGTAGCAAAATCAGCAGGAGATGGAAATGCTTCCCCTGTCTCTCCCAAAGTTGCTGTGGCTCCTGTTGCCTTTAAAGTAACGTCTAAATCTGCTGCCCCAGCACCAAAGTCATTTACAGAAGCTGTGGTCTCCAGTCCACCCAAAGCAGCTGAAGCCCCCAAGGTTGCCTCTGAAGCTCCAAAAGTAGCAACCCCTGCTGTTTCAGAATCCAAGACTCCTCTGCCTGTAAAAGCAGCTGCTAAGCCTAGCCCTGCCCAAATGCCAAATGTGAAACCAGCCACTGCTACTCCTCCAAAACCTGCTCCTGCAGCATTAGAGGATGATGATCTCCCACCTCTCTTACCACCTGAGAATCCTTTTTCAATGCCTGCTTTCCCCCCTATGCCACCTAGTACAATGCCTGTTGTTACCCCAGCAGCTCCTAATGCAGGATCTGTCTCTACCAGTAAAGTTGAATCTGCCCCTAAAGCTAAGCAAGCCCCTAAAGCTAAGCAAGCTCCTAAAGCTGAACACAAAGCACCACCTGCCCTTAAAGTTGAGGCTGCTCCCGCCCCTAAAGCTCAGGCTGTCCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGCTGAGGCTCCTCCCGCACCTAAAGCTCAGGCTCCTCCCGCACCTAAAGCTCAGGCTCCTCCCGCACCTAAAGCTCAGGCTCCTCCCGCACCTAAAGCTCAGGCTCCTCCCGCACCTAAAGCTCAGGCTGCTCCCGCCCCTAAAGCTGAGGCTGCTCCCGCACCTAAAGCTCAGGCTGCTCCCGCCCCTAAAGTTGAGGCTGCTCCAGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTGCTCCAGCACCTAAAGCTCAGGCTGCTCCTAAAGTTGAGGCTGCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTCCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTCCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTCCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTCCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTCCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTTCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGCTGAGGCTCCTCCTGCACCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTCCTCCCGCACCTAAAGCTCAGGCTGCCCCTAAAGCTCAGGCTACTCCTGCACCTAAAGCTCAGGCTGCTCCCGTCCCTAAAGCTGAGGCTGCTCCAGCCCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGTTGAGGCTGCTCCCGCACCTAAAGCTCAGGCTGCTCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGCTCAGGCTGCCCCTAAGGTTGAGGCTGCTCCCGCTCCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGCTCAGGCTGCCCCTAAAGTTGAGGCTGCTCCCGCCCCTAAAGCTCAGGCTGCCCCTAAAGTTGATGCTGCTCCTGCACCTAAAAATAAGTCTTCCCCTAGCCCTAAAGCTGAGCCTGTTCCTGCTCCTAAAGTTGAGACTGCGCCCAAAGCTGATTCTGCTCCTACCACTAAGGTTGAAGCTGCTCCTGCTGCTAAAGCTAAGCCTGTCGCTGCTCCTAAAGTGGAGGTGGTGGCTTCTAAAGACAAGCCTGCTCCTGTCCCTAAATCTGAGGTCGGTGCTCCTATCCCTAAAGCTGAGTCTGTCCCTGCTTCTAAAACTGAGGCTGCTCCTAAAGGCAAGCTTACGCCTAAAGCAAAGGCTGCTGCTCCTGCTCCTAAAGCTGAGGCTGCTCCTAAAGGCAAGCCTGCCCCTAAAGTTAAGCCTGTTCTTACGTCTCAAGTTGAAGCTGCTGCTTCAAAAGTTAAGTCTGCTGCAGCCCCTAAAGTTAAACCCACCTCTGCCCCTAAAGTTGATACTGCCCCTACCCTTAAAACTGAACCTGTCCTTTTCACTAAAGTTGAGCCAGCCCCTGTTCCCAAACCTGTTAAAGCACCATCCATACTGGATCCAGTCATCAAGAACGACAAGGGGTCTGGCACTGAATCTGACAGTGACGAATCTGTTCCTGAACTGGAGGAGCAGGACTctgcacagacacaaacacagcaggCACAGCTTGCAGCTGCAGCTGAAATTGATGAGGAACCAGtcagcaaagcaaaacaaagcaggAGTGAGAAGAAAGCGAGAAAGGCCATGTCCAAATTGGGGTTGAGACAAGTTGCTGGTGTTACCAGAGTAACCATTCGCAAGTCCAAGAACATTCTCTTTGTCATCACTAAACCAGATGTCTACAAAAGTCCAGCTTCAGATACTTACATTGTCTTTGGCGAGGCCAAgATTGAAGATCTGTCCCAGCAAGCTCAGTTAGCAGCCGCAGAGAAGTTCAAGGTACAAGGAGAAGCAGTTTCAAACATCCAGGAAAACACACAGACGCCGACAGTACAGGAGGAGAGCGAAGAGGAAGAGGTTGATGAGACCGGAGTGGAGGTCAAGGACATTGAGCTGGTCATGTCACAGGCCAATGTATCCAGGGCAAAGGCTGTGCGTGcactgaaaaataacaataatgacaTTGTCAATGCTATTATGGAATTGATGATGTAGATGGAGATCAGGGACTGGGTCACATTAAGATGTTGCTGATTTGATCTACACTATTGTTTGTACAATTTATACCCAAGAGAAATAAAGGCGTGGCTTGatgaaatta

Function

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231851 lncRNA upstream 32991 11033791 ~ 11035495 (+) True G156551
TU231773 lncRNA upstream 148081 10913904 ~ 10920405 (+) False G156497
TU231765 lncRNA upstream 166663 10895108 ~ 10901823 (+) False G156496
TU231865 lncRNA downstream 1431 11077362 ~ 11078675 (+) False LOC122328437
TU231864 lncRNA downstream 7857 11083788 ~ 11085604 (+) False LOC122328437
TU231887 lncRNA downstream 48161 11124092 ~ 11126634 (+) True G156572
TU231883 lncRNA downstream 72932 11148863 ~ 11152047 (+) True G156568
TU231912 lncRNA downstream 135110 11211041 ~ 11243036 (+) True G156590
XM_043224234.1 mRNA upstream 6239 11058159 ~ 11062247 (+) True prim1
XM_043225380.1 mRNA upstream 18830 11041080 ~ 11049656 (+) True rnd1a
XM_043224390.1 mRNA upstream 119586 10939395 ~ 10948900 (+) True slc17a9b
XM_043224407.1 mRNA upstream 129913 10934963 ~ 10938573 (+) True gid8b
XM_043224408.1 mRNA upstream 129913 10935070 ~ 10938573 (+) False gid8b
XM_043224126.1 mRNA downstream 1223 11077154 ~ 11085524 (+) True LOC122328437
XM_043224125.1 mRNA downstream 1358 11077289 ~ 11085524 (+) False LOC122328437
XM_043224013.1 mRNA downstream 9935 11085866 ~ 11098542 (+) True nfascb
XM_043224012.1 mRNA downstream 11870 11087801 ~ 11098542 (+) False nfascb
XM_043224014.1 mRNA downstream 11870 11087801 ~ 11098542 (+) False nfascb
TU231770 other upstream 144498 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 166346 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 367591 10698927 ~ 10700895 (+) False G156414
TU231625 other upstream 496240 10563344 ~ 10572246 (+) True G156399
TU231621 other upstream 513766 10551097 ~ 10554720 (+) True LOC122329061
TU231904 other downstream 98490 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 436694 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 437842 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 439868 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 442534 11518465 ~ 11518536 (+) True trnae-uuc_33

Expression Profile