RNA id: XM_043224233.1


Basic Information

Item Value
RNA id XM_043224233.1
length 2794
RNA type mRNA
GC content 0.50
exon number 14
gene id tfip11
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11062357 ~ 11068609 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCAGGGCACAGGATCCAAGATGGCTGTAAGAGAGGGCTTCTGACCTCCGCGTCGCTCTGATGTCACAGCTCTGCTTCCGGCCTCAGCAGGAAGTTGCTTCTGGATACGCTCTTGCTGATAGCGAGAATCCACATTTACAgCACAGAGATGTCTATGTCCCATTTGTATGGGCGTAGAGGtaatgaggaggaggaggatggtgTGGAAATTGAGAAGTTTGAGGTGACTGAGTGGGACTTGGCCAATGAATTCAACCCGGACAGACGCAGATACAGACAGACTAAAGAAGAAGCGACTTATGGGATTTGGGCAGAGCATGACTCTGATGATGAGCGGCCCAGCTTTGGGGGGAAAAGATCCAAAGACTATTCAGCTCCCGTGAACTTTGTGAGTGCTGGCCTACGAAAGACTGCAGCTGAAGAGAAAGCAGAGCAGGAGGGTTCAGATGACTCAAATGATAGTGGAGAAGCACCTCCTCCACCCCGCGCTGCTGCTCCCAAAAAACTCCAAACgGGTGGAAGCTTTAAGACGTCCCAAAGGTTTGCAGGTGGTATCAGAACAGGGCAGGACATCGGATCATGGGAGAAACACACACGAGGCATCGGTCAAAAACTTCTGCAAAAGATGGGCTACGTTCCAGGAAAAGGATTGGGCAAAAATGCTCAAGGTATTGTGAACCCGATTGAGGCGAAAGTGCGGAAGGGCAAAGGAGCGGTAGGAGCGTATGGCAATGAGAGGACCCAGCAGTCCCTGCAGGATTTCCCTGTTGTAGActctgaggaggaggaagagaaaGAGTTTCAGAGGGAGTTGGGGCAATGGCGTAAAGAACCAGGAACGGCAAAGAAGAAGCCTAAATATTCTTACAAGACTGTGGAAGAACTTAAAGCTCATGGCAAACTGACCAACAGGAGCATGAGCAGACCTGCTGGAGAACTGGCTCAGGTTAAGGTGATCGATATGACAGGCAGAGAGCAGAAGGTGTATCACAGTTACAGTCACATGAGTCAGAAGCACAGTGTTCCCGAGGAGGCCCCTTTGAGTGTGAGCACACGTGAACAGAAGACCTCTGGCTTCTCCTTACCGGAGCTGGAACACAACCTCAAACTGCTCATTGAGCTGACAGAGCAAGACATCCTACAGAGTGCAAGACGTCTACAGCACGAAAAGGACACTGTGGTGACCCTGACCCACGAGAGCGACGCACTGCAGGTCAGGTTGGCAGAGGAGGAACAGTCTGTTGGTCGGCTGGAGCAGGTGATGAACCTGGTGGATCGTTTCGAAGCAGGCGATAAAGAGGGAACCCCTGCTCTCAGCCTTCAGGAGTGCGCTAAGATCTTTCAACAGCTGCAGACGGAGTTCTATCAGGAGTATAAAACCTTGGGTTTGGGAGACCTAGCTGTGTCTGTGGTGCATCCTTTATTGAAAGAGAGACTTCGCAGTTGGGATCCACTGAagGACTGTTCAGATGGTTTAGAAGAAGTCGGTCAGTGGAGAGCCATTCTTGAAAGCTCACAATCTCTTCACGGTGGCCCAGACACTTCTAACATGGACCCCTATCACAGgTTAATATGGGAAGTGTGGGTTCCAGTCATGAGGAGCTGTGTGTCTCAGTGGCAGCCCAGAATCGTGGGGCCAATGGTGGACTGTGTGGAGTGCTGGGCTCCTGTATTGCCTCTGTGGATTCTGGATCATGTTTTGGAACAGCTTATTTTCCCACGACTACAAAGAGAGGTGGACAGTTGGAACCCACTGACAGACACGGTGCCGATCCATTCATGGATTCATCCCTGGTTGCCTCTGATGCAAACCCGTCTCGAGCCGCTGTACGCACCAATCCGCAGTAAACTAGCCCATGCCCTGCAGCGCTGGCACCCCAGCGACTCCTCTGCCAGACTCATTCTGCAACCCTGGAAAGATGTCTTCACACCCGGTGCATGGGAGGCCTTCATGGTCAAAAATATTGTTCCAAAACTAGCTTTGTGTTTAGGAGAGCTGGTGGTGAATCCTCATCAGCAAGTACTGGAGCCATTCAACTGGGTGATGGACTGGGAAGGCATGCTCTCTGTCTCCACCATGGTTGGACTGCTGGATAAgaattttttccccaaatggCTACAGGTGTTGTGTTCCTGGCTCAGTAACAACCCAAACTACGAGGAGATCACCAAATGGTATCTGGGCTGGAAAAGTTTGCTCTCAGACAACCTGCTCAGTCACCCACTGgtcaaagaaaaactgaatgaGGCTCTTGACATCATGAATCGTGCTGTTGCCTCTGGACTAGGTGGATATATGCAACCAGGAGCAAGAGAGAATATTGCGTATCTGATTCAGACGGAGAGAAGGAAAGATTTCCAGTGCGAGCCTCAGCCTGAGCGTCGTGACATGGACAGTTCTGTGACACGGCCACCAGGCACCGCAGCGGCACCAACATCTGTACCCACCAACTTTAAAGACCTAGTCCAGGCCAAAGCTGAGGAGAACGGCATCGTCTTCATGCCACTGGTGGCTAAACGGCATATGGGCAAACAGTTGTTCACATTTGGCAGAATAGTCATCTACATTGAGCGTGGAGTGGTCTTTGTCCAAGGCGAGAAAACCTGGGTTCCTACATCACTACAGAGTCTGATTGACATGGCCAAGTGAGATTGATGATCAGTCACAGAAGCTGTTTAATTGTTGCCGTCTAGTCTGCTTTCATGCAGTTCATAACGCTGTATCAGACTTGTCTGTCGATGTTTTTTATATTGCTGAAGAACTGGTTTTGAATAAATGAGTCTTTAAATTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K13103 TFIP11; tuftelin-interacting protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232088 lncRNA downstream 4362 11050293 ~ 11057995 (-) True LOC122329093
XR_006247882.1 lncRNA downstream 4382 11051236 ~ 11057975 (-) False LOC122329093
TU232086 lncRNA downstream 9062 11047145 ~ 11053295 (-) True G156719
TU232081 lncRNA downstream 26862 11033742 ~ 11035495 (-) True G156715
TU231828 lncRNA downstream 102511 10959635 ~ 10959846 (-) True G156538
TU232093 lncRNA upstream 2801 11071410 ~ 11075961 (-) True G156726
TU232094 lncRNA upstream 2801 11071410 ~ 11075961 (-) False G156726
TU232095 lncRNA upstream 2801 11071410 ~ 11075961 (-) False G156726
TU232097 lncRNA upstream 2801 11071410 ~ 11075961 (-) False G156726
TU232098 lncRNA upstream 2801 11071410 ~ 11075961 (-) False G156726
XM_043224127.1 mRNA downstream 74945 10985385 ~ 10987412 (-) True bhlhe23
XM_043224409.1 mRNA downstream 127450 10923126 ~ 10934907 (-) True dnajc5ab
XM_043224410.1 mRNA downstream 127452 10923126 ~ 10934905 (-) False dnajc5ab
XM_043224393.1 mRNA downstream 139277 10915631 ~ 10923080 (-) False trim101
XM_043224392.1 mRNA downstream 139277 10915631 ~ 10923080 (-) True trim101
XM_043224744.1 mRNA upstream 38332 11106941 ~ 11111646 (-) True pm20d1.2
XM_043224745.1 mRNA upstream 44400 11113009 ~ 11117428 (-) True pm20d1.1
XM_043224752.1 mRNA upstream 49073 11117682 ~ 11131520 (-) False lemd1
XM_043224751.1 mRNA upstream 49073 11117682 ~ 11131510 (-) False lemd1
XM_043224750.1 mRNA upstream 49073 11117682 ~ 11131510 (-) False lemd1
TU231697 other downstream 384308 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 694988 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 823084 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 830438 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 1228675 9832128 ~ 9833682 (-) False zgc:153284
TU232124 other upstream 32135 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 449401 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 672791 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 672791 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 674061 11742670 ~ 11742803 (-) True LOC122329333

Expression Profile