RNA id: XM_043224256.1


Basic Information

Item Value
RNA id XM_043224256.1
length 2532
RNA type mRNA
GC content 0.42
exon number 10
gene id hnf4a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14581032 ~ 14598335 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCagtattactaataatatttactgtaattttactttcttttttaaactaaagGAGCTGTATGCAAGTGGTTATAAAGCAAATGGACACAAAGGTAATCATAATCGTAAGTGGAGAAAATCTAACGTTTCAAAACACTGACTTTCCCACGAAGCTGCTTAAAAGCGAAAGCAACATTAGACTTGTGTAAATCTACACATCTGTCAGAAAGCATCACATTATATTCATGGGAAAAGTTGTTCGAACTATCACAGCATCTGTTAAGAAAAAAGAGCAGCATATTTAGTGAAGCATATGTCCTCATACGCTTGTCCCAcgctgtgtaaaaataaaactagacAGCATCGGTGTAATGGTGAAAAAACCTAAGCTTCAAACACGAAGGTTGTCGGTCTGTTCAAAGACAAATAATTACAGCACAGCGGAAATGAAAGCTGATACGAGGCATGTTGTCAAACagtacatttgtattatttcttatCAAAGTAATGGGAATCGGACAAATCAGAATGGCTAAATGAGTCTGTGTAAACCCTCCACTCCTTTCATTTCTCACACCCTTCTCCAACAAAACTCTTCCTACTCTAACGATTCATTCCTCAATATGGCATGAGTTTAAAAAGATGCAGACTTtgagaaatggagaaaaattaTAACAAACTGTCTATTTGAGTTTCTATCATCCTGTTGCCATAGCTACAGCTGTCATATGGATTGGTCTCTATACAAGCCTGGTTACTGTTTAACCTCTCCACCCACATTTGCCCAGATTAGGAAAATCAATAAGATAACAGGAGTACCGGCCTTACCTTGCGCCAACAACACCTTCACCAGAAACACAGAGGACTGTGCAAAACTTATATGTGTTAATTCTTTATCATCTTTCACTCTTAATAGAGCAAAATCAGTAAAACGCAGTGTTAGGGGACAAGAGAGATACCATGGTCAATGTGAACGCTCAGGCCAGCACCCATATGGATCCACCGTACGACTCCTCGCCAGCTGAAAGTGCCAATATGAACGTTGCCAATCACTTAGGGGCTGGCACCCTATGCGCCATCTGTGGGGACCGGGCCACAGGAAAGCACTACGGCGCCTCAAGCTGTGACGGATGCAAGGGGTTCTTCAGACGCAGCGTGCGCAAAAATCACATGTATTCCTGCAGATTTAACAGACAGTGCATAGTGGACAAAGACAAGAGAAATCAGTGCCGGTACTGCAGACTAAAGAAATGTTTTCGAGCTGGGATGAAGAAGGAAGCTGTGCAGAACGAAAGAGACAGGATTAGCACCAGAAGATCCAGCTATGAAGACAGCAGCTTACCCTCCATAAACGCACTCATTCAGGCTGATGTCCTTTCTAGACAGATTTCATCACCTGGTCCTATCTTGAACGGTGACATCAGAACGAAGAAGGTAGCCACTATAACGGATGTGTGTGAGTCTATGAAACAGCAGCTGCTGGTGCTGGTTGAGTGGGCTAAATACATCCCTGCATTCTGTGACCTTCCCCTGGATGATCAGGTGGCTTTACTGAGAGCTCACGCTGGAGAACATCTCCTGCTaggagctgccaaacgctccaTGCTGTATAaggatattttattattagGTAATGATCATATAATTCCTCGTAATTGCCCCGAATTGGAGGTGAGCCGTGTGGCTGTAAGGATCCTTGACGAGTTAGTCCTTCCCTTCCAGGATCTCCAGATCGATGACAATGAATATGCCTGTTTGAAGGCCATTGTATTTTTCGATCCAGATGCCAAAGGTTTAAGCGACCCAAGCAAGATCAAACGCATGCGATACCAAGTTCAAGTTAGTTTGGAGGACTACATAAATGACCGGCAGTACGACTCGCGAGGACGGTTCGGCGAGCTGCTACTTCTGTTGCCTACGCTACAGAGTATCACCTGGCAAATGATCGAGCAAATCCAGTTTGTTAAATTGTTTGGAATGGCAAAGATAGACAACCTGCTACAAGAGATGCTTCTAGGAGGTTCTGCTAACGAAGCTCCTCATGCCCATCATTCTCTACACCCACATCTGGTCCAGGAGCACCTCAGTAACAATGTCATAGTCACCACAAACATGGCCACTCCAATTCACAATGGCCAGATGTCCACTCCAGAAACTCCAATCCCATCTCCCCCGACGGCCTCAGGCTCTGATCATTACAAAATGGCTCCAGGGGTTATAGCCACAGTGCCCAAGCAGCCAAGCTCCATCCCTCAACCAACCATTACCAAACAAGAGGCCATCTGAGCGCACAGAGAAATGCAGATCAAGTTATTTAATTTGGTATTATGAATAGGCTGTGCTAAGTGTGACAAATCATTCTCACAGGCATCTGGACATAGTAACGCTGACATTTATATTCACTGGCTGTTAAATTTAAGGTTCTTAGTGTAAGACACTGTGAAATTGTTCAGAATTTCCTATTTTAAGAACTTTAGACTAAAATAattgagttatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07292 NR2A1, HNF4A; hepatocyte nuclear factor 4-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233366 lncRNA upstream 11523 14569132 ~ 14569509 (+) True G157611
TU233365 lncRNA upstream 12526 14567201 ~ 14568506 (+) True G157610
TU233364 lncRNA upstream 14302 14566519 ~ 14566730 (+) True G157609
TU233363 lncRNA upstream 14976 14564340 ~ 14566056 (+) True G157608
TU233302 lncRNA upstream 205982 14373577 ~ 14375050 (+) True G157551
TU233375 lncRNA downstream 5458 14603793 ~ 14623728 (+) True pkig
TU233373 lncRNA downstream 5683 14604018 ~ 14623728 (+) False pkig
TU233374 lncRNA downstream 5683 14604018 ~ 14623728 (+) False pkig
TU233382 lncRNA downstream 11194 14609529 ~ 15153978 (+) False itih6
TU233383 lncRNA downstream 11194 14609529 ~ 15153978 (+) False itih6
XM_043224259.1 mRNA upstream 86 14572247 ~ 14580946 (+) True r3hdml
XM_043225541.1 mRNA upstream 26902 14531453 ~ 14554130 (+) False rbms2b
XM_043225540.1 mRNA upstream 26902 14531454 ~ 14554130 (+) True rbms2b
XM_043224631.1 mRNA upstream 125489 14453706 ~ 14455543 (+) True LOC122328739
XM_043224625.1 mRNA upstream 152849 14390816 ~ 14428183 (+) True fmnl3
XM_043224023.1 mRNA downstream 1820 14600155 ~ 14603653 (+) False ttpal
XM_043224022.1 mRNA downstream 1892 14600227 ~ 14603653 (+) True ttpal
XM_043224566.1 mRNA downstream 5674 14604009 ~ 14623731 (+) False pkig
XM_043224567.1 mRNA downstream 9593 14607928 ~ 14623731 (+) False pkig
XM_043223963.1 mRNA downstream 44056 14642391 ~ 14646962 (+) True ccn5
XR_006247782.1 other upstream 237758 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 524211 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 526532 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3062496 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 3065161 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233368 other downstream 85655 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 113812 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 137666 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 394015 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 702369 15300704 ~ 15304550 (+) True G157620

Expression Profile