RNA id: XM_043224276.1


Basic Information

Item Value
RNA id XM_043224276.1
length 1053
RNA type mRNA
GC content 0.43
exon number 11
gene id ndnl2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 779085 ~ 785879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGCGGTATAATGTTGCTCAGCTCTCGGAGGAGCGCTGTACATCAGCAGCAGAAGAAATTACCGGGAAATTGTGCTCTTGCGCTTAAAACCAAAGCTGTAAGCAGATAACGTTATTTAACCAGATAACGTTATTTAACCATCACTGACAGatCGATCACCATGTCCCAGAGGAAGAAAGCGGTTTCAGCTTCACAGAGCAAAACTCAGAGACGCTCTCAGGTATCTCTGGATGAAGATGACGAGGATGCTAATTTTAGCCAAATGACATCATCACAGGTGCAACGAGCCCGAGAGAACTTCACGAGTGAACAGGTCGACCGCAAGGTGGCAGAAGTGGTCCAGTTCATCTTAATTAAAGACCAAAGAAAAATACCCATTCGAAGAGCAGACATTGCCAAACATGTGGTAAAGGAATACAAAGCCATCTATACAGAAATCATGAACAAAGTTTGCCTCAAATTTGATCAGGTTTTTGGATTAGAACTGGTGGAGATTGaccaaaaaaatcacatttacatcCTGATTAATAAGCTGGAGCCCATTCATGGAGAGCCATTGAGCATGCGTTCTGAAAACCCAAAGATAGGCCTGCTGTTGGTCATCCTGAGTGTGGTTTTCATGAAGGGTGGTGTTATTAAAGAGAATCTCGTATGGAATACGCTAAAGAAGCTGCGAGTGGACCCAGGGGAAAAGCATGATCAGTTTGGTGACATAAAAAAGGTGGTCACAGATGAATTTGTACGGCAGAAATATTTAGAGTATGTGAAGATCCCTCACACAGACCCAGTGGAGTTTGAGTTTCGCTGGGGTCTGCGGGCAGAGAAGGAGGTGTCCAAACTCAAGCTGCTAGAGTTTGTTGGAGAGCTTTTTGATCAGGATCCTCAGAGCTGGACACAGCAGTTCAGAGAGGCCAGTGCTGCTGAAATCGGCAGCCAGAGATCATGAACACCTTGTGTTGtgcatttattagtttaaataagaAGGTCTTCTTTAAtatggtaaaatattttaattacaatatttcttGTTTACAAATAAAGTTTAAGACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227900 lncRNA downstream 3978 770513 ~ 776050 (-) True G153911
TU227643 lncRNA downstream 96917 679034 ~ 683111 (-) True G153760
TU227619 lncRNA downstream 195446 575924 ~ 584582 (-) False G153757
TU227621 lncRNA downstream 195446 575924 ~ 584582 (-) False G153757
TU227622 lncRNA downstream 195446 575924 ~ 584582 (-) False G153757
TU227876 lncRNA upstream 55840 841719 ~ 845010 (-) True G153893
TU227922 lncRNA upstream 79598 865477 ~ 866747 (-) False vgll4a
TU227921 lncRNA upstream 79932 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA upstream 92643 878522 ~ 882184 (-) True vgll4a
TU227875 lncRNA upstream 112301 898180 ~ 899766 (-) False G153893
XM_043225342.1 mRNA downstream 469451 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 513996 258605 ~ 266032 (-) True LOC122329136
XM_043224278.1 mRNA upstream 23045 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA upstream 23045 808924 ~ 816154 (-) False tnnc1a
XM_043225308.1 mRNA upstream 79836 865715 ~ 871569 (-) False vgll4a
XM_043225136.1 mRNA upstream 97313 883192 ~ 895323 (-) False raf1a
XM_043225137.1 mRNA upstream 97313 883192 ~ 895323 (-) False raf1a
unassigned_transcript_2578 other upstream 233893 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 270133 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 721819 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 721931 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 721931 1507810 ~ 1512329 (-) False smim29

Expression Profile