RNA id: XM_043224278.1


Basic Information

Item Value
RNA id XM_043224278.1
length 2217
RNA type mRNA
GC content 0.39
exon number 8
gene id tnnc1a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 808924 ~ 834581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attaaaaatatggcaGATGAGGAGCAGAACAGGTGAAACCACTGACACAGCATCAGGTGTGAGCAGGAAATATCACTCTACATCTGAAACTGGTGACACTTAAAGAAAAGAACgcctcaagaaaaaaaaagaaagcaatctTGGAGCTATCTTTTATGGGATGCATTATTGGATTGCATAAATGTCCTGGTATACTTTTCTGCCTCGACCTCCTGTTGGAAGTCCAAAAATATGTGGAAAAGATAAAAAGCACATGAGGAAACAAATGAGTATGAGAAGCACACACCACATCCACTGGAGGTTCTGGAAGAGACAGAGGATACAACAGGAACTAAGGGAGAACATAGGAGGACACAGTGTGAGAGGAAATTGCTGTGTTCATCCGTGCTCTGCTACTATATGGTTTCTATGGCAACCTCTCCAAAATGATGTGCTCTGAATGGCGTTTCATGAGATGTGGGGTGATTACAGTCTAGGAAGGAAGGCTGATGTTTCTGTTAGCCTTTGCTGTAAAGGGAAGTATGCAGTGTTCTAATAAAAGCACACTTCCTGTCCTCATATTATGATTGTGCTGTATATCTTCTGCATTTCAGAGGAAATATTTCAATACTGCCCCCTTCAGAGGGCACAGAAAATTTGCATCATTTGTACAGCaatgtgtgttgttttaaatgtcaataaatgATTAGTTAAGACTACCGGggttgcttttataaaataaatagataaataaataaataaataaataaaagataaatgaataaagcatgCACAAAGCATTTTGATTCTATTTTCCATTGAATTTATTATGCACATTTAATCTGAGGAACAgatgtattttgtgtattttcctGGCTCAGTTGTAGACACGTGTCCAATTACACAGACACTATCCGTAGTTTTTAGTCACATGACCAGTTCGAAGACCTGGGGGGCAAAACATCCATGGAACTGCAGTAAAAGTCTGTTAAATTTCACATCTATTTTACAGCcacaaatatttatatcacctctcaaaacaagaaaacaaagctatgtgaataaaatgtaaataaatttccacttttatccaaagcaacttacaaataAGGACAAGGAAAGCCTTTCAGCCATGATAATGTGTGAGAGTTTGCCAGTGTTTCTCTTATGTCTTTAAAGCTATTTAGCTGAACTAAAGAAGTTACTATATTTTGTATAGTGCAATAATGCCTTTGTCTCTTTGTCACTTAATACACTAAATTCATGGTGGAGAAATgcctactttttattttatttcattttacaggtATATTAGAATGTATGCAAGTACATTTCTTTGCTCAGACACAAAGATTAGATTAATTTGCTGATAGTTTACCCTCACATATTTGAGTGAACCCTCATCCTGACCACATAGTTGTTTTATCAGGCTGGAGTGACTGTGATGGACGTCCCGTACTCAGAGGGGCAGGAGGGAACAGGCTGTCCTGCTTCATAAAGCTCATTTAGCACCGTGTTTTCTGCTCTCCACCAGTGCCAGCACTCTTCCTGATCTCCTCTCAGGTGACATACAATGAACGATATCTATAAAGCAGCGGTAGAGCAGCTCACTGAAGAGCAGAAGAATGAGTTCCGCGCagcatttgatatttttgttcagGATGCTGAGGATGGGTGCATCAGCACTaaggagctggggaaggtgatGAGAATGCTGGGTCAGAACCCCACGCCGGAGGAACTACAGGAGATGATTGATGAGGTGGATGAGGATGGCAGCGGTACGGTGGATTTCGAGGAGTTTTTGGTCATGATGGTGAGGTGCATGAAAGATGATAGCAAAGGAAAGTCAGAGGAAGAACTGGCAGAACTCTTCCGTATGTTTGATAAGAATACAGATGGTTACATTGATCTTGATGAACTGAAGCTTATGCTGGAAGCTACAGGTGAAACCATCACTGAAGATGATATTGAGGAGCTAATGAGGGATGGAGACAAAAACAATGATGGGAAAATTGATTATGATGAGTTCTTAGAGTTCATGAAAGGAGTggaataaataatgaagaaatGTCTTCCTGGTGTTTCACCCTGGATTGTCTGTACACAAAAGCTTAATGAGAAAGATCAACAGAGAGTCTATGGTATATCTCATTATTGTGCTTGTCATTTTCAGCACACTGTTTTcagaatattaaattatttttcacattgcaTAAACAATCCGTGCAGATTTAA

Function

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0003231 cardiac ventricle development biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K05865 TNNC1; troponin C, slow skeletal and cardiac muscles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227900 lncRNA downstream 32874 770513 ~ 776050 (-) True G153911
TU227643 lncRNA downstream 125813 679034 ~ 683111 (-) True G153760
TU227638 lncRNA downstream 224342 575924 ~ 584582 (-) False G153757
TU227876 lncRNA upstream 7138 841719 ~ 845010 (-) True G153893
TU227922 lncRNA upstream 30896 865477 ~ 866747 (-) False vgll4a
TU227921 lncRNA upstream 31230 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA upstream 43941 878522 ~ 882184 (-) True vgll4a
TU227875 lncRNA upstream 63599 898180 ~ 899766 (-) False G153893
XM_043224276.1 mRNA downstream 23045 780028 ~ 785879 (-) False ndnl2
XM_043225342.1 mRNA downstream 498347 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 542892 258605 ~ 266032 (-) True LOC122329136
XM_043225308.1 mRNA upstream 31134 865715 ~ 871569 (-) False vgll4a
XM_043225136.1 mRNA upstream 48611 883192 ~ 895323 (-) False raf1a
XM_043225137.1 mRNA upstream 48611 883192 ~ 895323 (-) False raf1a
XM_043225134.1 mRNA upstream 48611 883192 ~ 895323 (-) False raf1a
XM_043225135.1 mRNA upstream 48611 883192 ~ 895323 (-) False raf1a
XR_006247804.1 other downstream 23045 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 185191 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 221431 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 673117 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 673229 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 673229 1507810 ~ 1512329 (-) False smim29

Expression Profile