RNA id: XM_043224280.1


Basic Information

Item Value
RNA id XM_043224280.1
length 6262
RNA type mRNA
GC content 0.51
exon number 23
gene id tasorb
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11638613 ~ 11651271 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGTCGTCTGACAGCTCAACGACTCTCGCGCGCGCCAGCGACCACGGCTCCGCGTCATGACGTCTAGACGCTGCGCACTTCGCCGCAGCGCCGCTGGGGGGCGTCAGGCCGCGTGAATGTAAACAGAGTGACGCCAGAGTTTTGCAGTGGTGGGGAAGGTATACGTCACAGGCATAATGGCGGAGGCTGGTTGAGAAGGAGAATTACTCCGTGAAGCGGCACTGAAACCAACTTCATCGCCCGCTGACGAGGTGACCGCTGGTCCGAAAAATGGCTAGCAATTTCAGCCAGGAGAGAAAAATCGACAAGGAGAGCAGCAAGGCCGGCGGCCTAACCTTGGAGGATGGCGATAGCAAGAAACAATTGTTGTCAGCCTCTAGCACGGCCACATCCAAGCAAAATGGCGATCAAGCTGGATGTGAAGACGAGCAAATGTCTGAACAAGATGCTTCTGAGCGACGGAAGGCAGGGCTGTCGGACCTAAAAAACTGCGGCGGTTCGCCCTCGACGCTACCGCGGTCGGCCGAGGAGCTGCCAAGGAAGAATTTTCAGATTCCGAGGAAAACCAAGGAGCGGAAAGGTCTCCTTCAACACTTGCCTCCAGATTCCAGAGAGTTTGAGGAAGTTGTGAAGCTTCTGTCCACGTTCTACTTGGACGCCACCTCCCGTGGGACTTTCACATACACCAAAGCGTGTCTCATTCACAACGAGCTCTTGGAGAAAGAGTTCATCGAGAAGAAAAGGGAACTGAAGCAGAATGGCAGGACAGAGGCAGAACTCGCGGAATCCTATGCTTTTTTGCTGCCTGAGAGGAATAAGGCTCACTGGATCTGCGAAAAGGGTCTTTCTGTGGGACATTCGCGGATCAACAATCTGGGAAGCCCCGTCAAAGgggtTTACCTCTCAAAATACTCAGATTTGTTACAAATGAATCCATTTGAAGTGGGTGCTGCTGGAgacataataatatttaaaatcatgaaGGGTAAAGTGAAGACAATATTTGACAACATGCCCAAAAACAATCTTGAGCCGACCCTTAAATATGACAGccatgttttcaaaaatgccAGCAAAGTGACCTCATTATTGTCCTATAGGGCCTTTGAGCACACTCAGCAATACTTCTATGAATTTGCATTTGAGGAGCTAAGGTCAAGGCCCAGGCATGTGTTGCCATATGCGGTTGTGTCTTTCCAGTACAAAGGCAAAGAGTCAGCCACGGCCACACACAGGTTAAACAGCATGTTATATGAAGGGCAAAGAGTTCGGCGAAGATATACGGTTTGGAGTGGCTCCCTGGTGAATAAGGGAGAAGAGGTCTATCAAGTTTACATCCGGTCATCGAGCCTCCATCACCTCCCTCTTAAACTCCCAGACAAGCTTGACATTAATACGGCTATGCATCTCGATCAAGTGAAGAGAAAGATCCCACCCGTTCTGCTGTCATGGGAAGCGTACAGTGGATCGCGAGAGGcatttaagtGTGGGATGTACTGCAGCCTGTATGAGGTCATGGGGAGGAGTAAACAGGAAAACAGTCTGTCGGGACTGTTGCACCGgcttgagagagaaagaatgGTTTTGGTGAAGCCATTGATAGACAAAGGATTTCTCTTCCTCCTTTCGTCTTCTCAGTTGCACACTACCCCTGaGCGACTAGGAAGGAATAACAGGGTTTTGCAAGCGCTTTTTGTATTTCAAGAGCAGAGAAGCACCTCGAAGTTGAttttgaagaACTCTGGAGTAGATGAGGACCCTCTGGTTCCATTAGAGCCTAAAGACCCAATCAGCCATCAGCTGGATAATTTTATACCCGCCCTTCATCATGGCCTCTACAAGCTGCGTGCCAATCCACCCAAAGAGCTTGCAGCAGGACTAAAACATCAGGTGCTGGACTACCTCAACCAGAAAGAGCAAGGTGTCATACGGCCTTTCCACATAGTGGAGTACCGCCATAGTTTGGATGACCGGACTAACCAACACCAGGCACCTCGTCCTAAGAATATGGATGTGGCACTGAACTCTTACATATATGGTCCGGGACAGTTCCAGCTGCCTGTGGAAGCGCTGCAGCAGGGTCTGATGGACAGCCAACAGGGGACAGCGTCTCCTCCAGCAGGTGCAGAGGAGTACAGTCCTGTCTCAGACTGGGGAGGGTCGGACAGACAGGCTCCTGGTAGCAGCACGATTGGGGTTTCTCAGTCCAACGGCAGTGCTCAGAGGGCACAGGGAGAGTATGACAAAGAAAAGATGGAGAAATTGCTAAAGCTGATACAGTTACATAAGCGGACTTTGGGCAAGGAGGAGGGGGGCGGGCCTGAAAGAGAAGAGGACTGGGACCCTGCTGGCCTGAAGAGGAGACTGGAGAGGGAAGGTCCTGGGGGTGTGAGCAAGTACCTTAGGACGGGTCTGCTAAATGGAGAGCCAGGAAGAGTGGTGATGGACAGCATGGGGCTGTGTGACACGGACCTGCGGGAGCGCGTGACTCAGAGTCCCACCCTCCGGGACACACACGCCTTGCTTAAACTCTTCCTCAACACGCTTAACAGGATGGCCCAAAACTCTAACACTGCCAGCAGCCAGCCTGCGATGCTCCCCAAAAGTGCAGAGAGACACGACTCAAGTGACTCAGCCACCCACTGTGATCTTGACCTGCGTGGCAGGCGTGCGGATGAGGAGCAGGTTAACCAGGACTACTTGGAGGAGCAGATGGCCTGCAGCAGGAGCAGTATAGATGTGTACAGTCCCTCGTACAGTCTGGAGCAGCAGCCCTCTCGTCAAGCAGAAGCTTCACATCAGAGCCACCATCTCTGGAGAACGTCCACCAGAGCTTCAGAGGGTGTTGGTGAAGCTTGCTCGAGTGGAGGCGAGAAGCAGGTACCCTCTACAAGGAAAGTAGTAGACACTATCCTCGACAGTGAGTTCCAGAACCTCTGCACTGGGATCCAGAAACTGTTGGAGGCCCAGCATATAATTTACAACCATCAGCCTCCTTTGCCGCGATGTGAGGATCAGGCAAAATTGTCAAGCTCGGCATTCTCACCTTTTGTATCCAAATATGTCTCATCAATACCTGTTCAGAGCTACGTTAACACACTCTGTGAAAAGATGAACCATTTGATCCAGGATCCCAGTGCACCTGCACAACCCGTGGCTGTTGTGTCACCACCTGCTGTTGCCCCAGTGCCCGCCCCCTTGCCACCCGCTCCACCCCCTTCTGCCATGCCGGCTCCTACCCAACCCACGCTGCCCTCACCACCTGCTCATCCTCCCACTAAAACATTATCTCCAGTGCCTAAGTCTCAGGCTTTGTCGAGCAAGTCGCAAGCTACCGCTAAACCACCTCCTTCAGGAAAGCATCGCCTCGGCACTGTCAAAGAGGTCCACCTGTTTTCAGCAGAAAAATCAGCTGACCCCAAGAGTACAGATGTTGTGGAAAATCCTATGTGCTCCCCATCAGCTGGAAGTGCCAGTCAACCTCCAGTTGCATCAATCCCAGAGATTCCCTCAGAACCTACTCATGCAGGAACCTCTAGCACTGTGGGAGGCAGCGTTATTGGGCAAATCAAGCCTGATGTGTTGTGCACGCTGATGGAGATCATGCAGAAAAATGCAGTAAAGTTTTACATTCAAAGAGGTGATGAGGAGAGCAAACTCTGCACTGAGATCAAGGAGTATTTACGCAGCCTTGGCAATATTGACTGCAACCCTCCGAATTACCTGGAGAGTAAAAGTCAGCAGAAGTTCATGATCATTATTCAGAATGAGGATATAGCCGCTCATGTACATAAGaTTCCAGCACTGGTGTCCCTGAAGAAATTGCCCACAGTTTACTTTGCTGGAGTGGACAGCCTGGATGATGTGAAAAATCGCACTTACAATGAACTTTTTGTGTCTGGAGGACTCATTGTGTCAGATGAGCTTATTCTCAACCCTGACAATATAACACTAGAGAAGCTACAGGCATTTCTCAAGTTCCTGGAGGAACAGGGCTCACCTTGGAAGTGGAAGGTGCACTGTAAGACTCAGAAGAAGCTTAAAGAGCTCAGCAGGTTAAACACTGAGGCCCTGGATCTGTTGAACCTGCTGACGTCCTACCAGAAGAAACACCTGGTGGAGTTTCTGCCTTATCACGAGTGTGACACTCCATCTAGGCAGGCTCCTGATTTGGACTGTCTGGTCAAGCTGCAGGCTCAGCACACACAGCTTCGACACCTCATTTTCCTCACAGAAAAGCACGATGACACATTCTCCCAGTTCTCCAGTAGTGGAGTCATCGTTGCAGGTATGAACGACATCATGAACAACTTCCAAAGTTTGATCAGTGTCCCGGAAGAAGTAGCAGTTGCTTCCCTACCTGAACCAGTGGAGCCTGATGCCGTTCGAGATGAGGAGGACATGTCTATAGACTCTGAAGACGACATGCCCATTATCACAGAGACGTCCATTCAGACTGAAAATGAACTTCAGGAACCACAGGCACCTCGGCCACCCCCACCGCAGACCGATGGATTTCGTCCTCCCTTCCCTGACCAACCCTGTGTGGACCCCATTAGTGATCCACTTGTACCACCAAACCCCTCCACCTACCCCACCCAGGGCGCTTTCTCCACTGATTATGCAGCTCTGAAGTCTGCCATCGCTCAATATAAAGCTGCCAGCCAGGAAGGCTTATCTAGGCCTGATGTAGAAGACCCCCTTGCCAGTTTCGGTGTAAACCCCCACCAGAGCTACCTGTGTCCCAGCTCGGCACAGTGGAGCCCTTACTCTGGTTCTCCCGCATACCATATGTCCTCAGCATATTCGTCTCCAGTTAGTATGGCCTCCAGAGGATCAGAGTACAGCCAGACTCCTGCTCCTTCTGGGACCCAACCGCCAACAAACACCTCCGCCATACTTGTTCCTCAACCACTCACTGTTCCCCTTTCTCTCCCTCAGCCCCCTGTTAGCTCAGTGGAGGTGCCTTCTATTCCAGAATTGGCCACCTCTCTTCAGCCACCGGGACAGTCTCTACCTCTCCCTGACAGCTTGGGAGTGCCTGGGGCTGCAGCGGCAAGCACTGCTAACCAATTAGGACTTGGTGGCTCTCAAACTGCTAAGATGGTTGTAGAGTCTGCTTCCTCATCCACTGCTTCTTCCTCTCTTCACACCACTTTTCCTTCCTACCCAGATAATACTCTTTTTCCAGCCCTCACTCCAATTCCCCCTGTTCCAACGCTTTTCGGCTGGGGTCCTACACAAGGAGTCCAGCAGGGTTACGTGGCTGGACCGAGTGGGGCTGGATTCGGCGCTCTACCTTCCACCCAAACCGAGGCCGCAAGGCCCGCTGATGGATCATGGGTGGGAGCCACTGAGAGCGAAACTGCTCGTGGACAAGAGGAAGAAGGTGCCCCGACTCCTAAAGTGGGCAATCAGGAGGCCGGTGGAGAGAAAGGAGGCACATTGGGTAGTTCAACCTCAATTGGCCAAGGCAGCAGAACTCCAGTGAACTCGTCCTGTGAAAGTCGGGGTGGCGGTCAAACCCCTCTCAATAGGGGAGGCACTGCCAGCAGAGGACTCTTACCCATCCCTGGAGCACCGATGGGAGCCTTGTGCCGAGGCGGACACAACAATAGCATGTACAATCCCAGAGGAGGACATCCTGATATGATGCGTGGTGGTTTCAGGGGTCGAGGAGTACCGCCACATCCCATGAGATCTAGACCGGGTCGGGGTCACATGAGAGGGGGCCCATCCTGTAACTGGGGTTATCCCCCTGGGAGGGGAGGGGGTGGTCGGTCAGACTACTATTCGGACTACACCTATAACTAAATGCCATAGGGATGCCCTATAGACTACTGGCATTAGgaatgtacatatttaacattaagagcacatcaaatcaaaatatcatctgaaataaaaaaaaaaaaaatgaaatctggTTTTGTATGACTGAGGTTGGTGACTCAGACATTGGCCAGATTTTCACTGTTTTCAGTAATGCTCTTCCTAAACATGTTTGAAAAACCTTGTTCATACcactatatttatattgccAAGAAATGTAATTGCCTttcaatgtttcatttttgtcaaTACTTTTCGTTCggattttcaacaaaaaaatggtttgtgAACAAGAAGCAAAATgcagacaatatttttttaaagagaaaaagtgAGTCATTCTtcattttagctgttttttgttttgtttttttcattcttggTTGTACAGATGTTCTATTAAAACAAGGTTGTATCAAACATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232213 lncRNA downstream 98568 11539623 ~ 11540045 (-) True G156812
XR_006247856.1 lncRNA downstream 261925 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 284785 11353159 ~ 11353828 (-) True G156785
TU232149 lncRNA downstream 393793 11242600 ~ 11244820 (-) True G156762
TU232146 lncRNA downstream 475594 11162664 ~ 11163019 (-) True G156759
TU232436 lncRNA upstream 111169 11762440 ~ 11763023 (-) True G156962
TU232440 lncRNA upstream 112438 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA upstream 130296 11781567 ~ 11782366 (-) True G156971
TU232457 lncRNA upstream 142332 11793603 ~ 11851710 (-) True G156972
TU232469 lncRNA upstream 403975 12055246 ~ 12061368 (-) True G156978
XM_043225461.1 mRNA downstream 7637 11544530 ~ 11630976 (-) False LOC122329255
XM_043225460.1 mRNA downstream 7660 11544530 ~ 11630953 (-) True LOC122329255
XM_043224593.1 mRNA downstream 102602 11532641 ~ 11536011 (-) True guca1b
XM_043224596.1 mRNA downstream 106803 11530037 ~ 11531810 (-) True oard1
XM_043224594.1 mRNA downstream 106816 11530037 ~ 11531797 (-) False oard1
XM_043224283.1 mRNA upstream 128 11651399 ~ 11656603 (-) True asb14b
XM_043224286.1 mRNA upstream 6220 11657491 ~ 11683407 (-) True dnah12
XM_043224292.1 mRNA upstream 80960 11732231 ~ 11734946 (-) True ognb
XM_043224297.1 mRNA upstream 85626 11736897 ~ 11737585 (-) True LOC122328548
XM_043224295.1 mRNA upstream 93449 11744720 ~ 11746587 (-) False LOC122328546
unassigned_transcript_2621 other downstream 120532 11518010 ~ 11518081 (-) True trnah-gug_32
TU232124 other downstream 533390 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 960564 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 1271244 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 1399340 10237096 ~ 10239273 (-) False ankrd52a
TU232410 other upstream 90129 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 90129 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 91399 11742670 ~ 11742803 (-) True LOC122329333
TU232418 other upstream 92848 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other upstream 93991 11745262 ~ 11745395 (-) True LOC122329329

Expression Profile