RNA id: XM_043224290.1


Basic Information

Item Value
RNA id XM_043224290.1
length 1302
RNA type mRNA
GC content 0.41
exon number 9
gene id dnase1l1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11738795 ~ 11741871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaagaagaagaaggtgtgTCCTCGAGCTTCTAAGTATAACACCAGTGGAAACTCCTTACTCCggaaggaaaagagagagagagagagcagtgttTTTGAAGTGAAACCCAACACATTTCAGATGAGGATGACCGTCAGACTGTAccttctcactctctctgttatTTCTGGCCTGCTGAGCTGCTATGGCTTCAGAATTTGTGCCTTTAATATTAAGAGTTTTGGTGATTCAAAATCAGCCAATGCCAACATCTTGAATTCTGTATCACGGATTGTATCTCGCTGTGACATATGTTTGCTCCAGGAGGTCAGAGATCAGAAAAACAAAGCTGTCCCTCGACTGCTTGAAGCACTTAACAGACTTAATGATAATGATTATGCCTATGTGGCAAGTGAACGTCTCGGGAGAACGCAAACCTATCAGGAGCAGTACGTTTTTGTTTATAGAAAAAGCAAAGTGAAGCTGATAAACCAGTATCAGTATCCAGATACACAAAAAGGGGATGAAGATGCTTTCTCCAGAGAACCTTTTGTGGTACATTTTCAAGCCCCTAAAACAGtGGTCAAGGAGTTTGTCTTGATCCCTCAGCATACTACTCCCTCAAACGCCACCAAAGAGATTGATGAACTCTATGATGTCTTTGTGGACATTAGAGCACGCTGGAAAATTGAGAATGTGATGTTTCTTGGAGACTTCAATGCAGCTTGTGGTTATGTGGCTAAAAAGAACCGTAAGAACGTCAGACTTTTCTCTGACCCATCTTTCATCTGGCTGATTCAGGATAATGTGGACACCACAGTGAAAGAGTCGACTGACTGTGCATATGACCGAATTGTTGTGCACGGAGAGCCATTTCTCAGAATGATTGAACCGTTATCAGCTCAGCCGTTCAATTTTCCCAAGGAACTCCACCTTACAGAGGCAGAGGCTCTAGAAGTGAGTGATCACTACCCCATTGAAGTGCTACTCAAAACTGAGAAGTCTGGGTTCCTCTCAAGAAACAGCAAAGCTTCGTGTCTTCTGCCTACAACATTCATTCTGATCATTTTACCGCTACTGCAATCGATCATATGAACCAAAAGTGGATTATTCATCACCTGAAGTGGAATTTTACTTTGCTGTTACACAGCTGTTATATACTTGAACCCTTACATGTCTGCAGAATGTGCTGGAACATTGTTTAATACCTTTTATAATATCTCTTTTtgataaataggaaaaaaaaaatactaatacaagtaaaatgtgttttgtaggTTACTGAGAAATATTCcataataaaagaaatttttTGACTGGGA

Function

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG:

id description
K11995 DNASE1L; deoxyribonuclease-1-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232250 lncRNA upstream 3858 11734256 ~ 11734937 (+) True G156828
TU232248 lncRNA upstream 6434 11730998 ~ 11732361 (+) True LOC122328549
TU232067 lncRNA upstream 82415 11655795 ~ 11656380 (+) True G156701
TU232066 lncRNA upstream 83479 11654916 ~ 11655316 (+) True G156700
TU232065 lncRNA upstream 84178 11654255 ~ 11654617 (+) True G156699
TU232225 lncRNA downstream 237 11742108 ~ 11745778 (+) False kctd6b
TU232229 lncRNA downstream 237 11742108 ~ 11745343 (+) False kctd6b
TU232230 lncRNA downstream 237 11742108 ~ 11745778 (+) False kctd6b
TU232237 lncRNA downstream 237 11742108 ~ 11745778 (+) False kctd6b
TU232244 lncRNA downstream 21836 11763707 ~ 11822844 (+) True G156823
XM_043224298.1 mRNA upstream 6792 11730980 ~ 11732003 (+) False LOC122328549
XM_043224294.1 mRNA upstream 8616 11727245 ~ 11730179 (+) False kctd6b
XM_043224293.1 mRNA upstream 8616 11727248 ~ 11730179 (+) True kctd6b
XM_043224291.1 mRNA upstream 12303 11723156 ~ 11726492 (+) True abhd6b
XM_043224289.1 mRNA upstream 16509 11705759 ~ 11722286 (+) True flnb
XM_043224287.1 mRNA downstream 20558 11762429 ~ 11794733 (+) True flna
XM_043225315.1 mRNA downstream 54623 11796494 ~ 11799916 (+) True emd
XM_043224346.1 mRNA downstream 124847 11866718 ~ 11868437 (+) True cfap126
XM_043224774.1 mRNA downstream 181013 11922884 ~ 11924595 (+) True tnnc1b
XM_043225157.1 mRNA downstream 306890 12048761 ~ 12060362 (+) False tnnc2.1
unassigned_transcript_2622 other upstream 220259 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 222924 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 224949 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 226097 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 561762 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2312493 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2314814 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2557830 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2942119 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2970276 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile