RNA id: XM_043224304.1


Basic Information

Item Value
RNA id XM_043224304.1
length 4962
RNA type mRNA
GC content 0.44
exon number 26
gene id smc1a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16494956 ~ 16505598 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcctgCATTCTGCTCTAGACGGGGGGCGTGTACACGAGATCATTTTATGTCAGATTATTATTGTCTGTATACACTATATGTAGCCTAACATATCTAGTTGCCAGTTCGTTTTAAATCCGCTTTGCCGCCGCCAAACAACGTCTGGAGAAACGCGTTTACCAAACCCTGCACAGAGCATCAATCGGACATCTCTCTCCTGAGATAAATCAACCAGCATGGGATATTTAAAACTGATCGAGATTGAAAATTTCAAATCTTACAAAGGACGTCAAATAATCGGACCGTTTCACAAATTTACGGCAATAATCGGCCCAAATGGATCCGGGAAGTCAAACCTTATGGATGCCATCAGTTTTGTATTAGCAGAGAAGACCAGTAACCTGCGTGTTAAAACCCTGAAGGACCTCATCCATGGAGCACCAGTGGGAAAACCAGCGGCCAACCGTGCCTTTGTGAGCATGGTGTACTGCGAGGACAATGGAGATGAATGCACCTTCACACGAGTCATCAttggTTCCTCCTCAGAGTACCGAATCAACAACAAGGTGGTCGGGCTTTCAGACTACAGCGAGGAGCTGGAAAAACTGGGTATCCTAATTAAGGCCAGAAATTTTCTTGTGTTCCAGGGTGCAGTGGAGTCCATAGCCATGAAGAATCCCAAAGAGAGGACCACTTTGTTTGAGGAGATCTCCCGTTCTGGTGAGCTGGCCCAGGAATATGACcgcagaaagaaagagatggtgAAAGCTGAAGAGGACACACAGTTCAACTATCACCGTAAGAAGAACATCGCAGCGGAGCGCAAAGAAGCCAAACAGGAGAAAGAGGAGGCTGAGAGGTACCAGAGACTGAAGGATGAGGTGGTCAGGGCTCATGTTCAGCTACAGCTCTTTAAACTCTACCACAATGAGGAGGAGATCGAGAAGCTGAACAGAGAGTTGTCTCAACGCAACCGTGAGATTGAGAAGGACAGGAAGAAGATGGATCATGTAGAAGAAGAGCTcaaggaaaagaagaaagagctGGGAAGAATGATGAGGGATCAGCAGAATGTGGAGAAGGAGATAAAAGAGAAAGATGCTGAGCTGAACCAGAAACGGCCACAGTATATCAAGGCCAAGGAGAACACTGCCCATAAAATTAAGAAGCTGGAGGTGGCTCGAAAATCCTTGCAGAACGCCCAGAAGATGTACAAGAAGCGCAAGGCAGACATAGAGGAACTGGATCATGAGCAAGGTGCTGTGGAGATGGCGAGGCAGGAGTTTGAGGAGCGGATGGAAGAGGAGGCACAGAGTCAAGGCCAAGATTTGACACTGGAGGAGAACCAGGTGAAGCAGTATCACAGGCTAAAGGAGGAGGCCAGTAAGCGGGCAGCTACTTTGGCACAGGAGCTAGAGAAGTTTAACCGGGACCAGAAGGCTGACCAGGACCGACTGGATTTGGAGGAGAGGAAGAAAATTGAGACTGAGGCCAAAATCAAACAGAAGATTCGTGAGATTGAGGAAAACCAAAAGCGCATTGAAAAGCTGGAGGACTATATTGCAACTAGCAGACAGTCTCTGGATGAACAGAGGCGTATGGAAGAGGAACTTACTGAGGAAGTGGAGCTGGCCAAAAGAAGGATTGATGAGATAAACATGGAGTTAAATCAAGTGATGGAGCAACTTGGAGATGCTCGCATTGACAGGCAGGAGAACAGCCGGCAGCAGCGCAAAGCTGAAATTATGGAGAGCATTAAACGGCTTTACCCTGGCTCAGTATATGGCAGACTGATCGACTTATGCCAGCCCACCCAGAAGAAGTACCAAATTGCAGTGACCAAAGTCCTGGGAAAAAACATGGACGCCATTATTGTGGACTCTGAGAAAACCGGCAGAGATTGCATCCAGTACATTAAAGAGCAAAGAGGAGAACCAGAGACCTTTCTACCTCTTGACTATTTGGAGGTGAAACCCACAGATGAGAAACTGAGAGAGCTTAGGGGGGCAAAACTAGTGATCGATGTGATCCGCTATGAGCCGCCACACATAAAGAAAGCCCTTCAGTATGCCTGCGGCAATGCTTTAGTGTGTGAGAATGTGGAGGACGCTCGCAGGATCGCCTTTGGAGGACCATACCGGCATAAGACCGTGGCTTTGGATGGAACTCTCTTCCAAAAGTCAGGTGTGATCTCTGGTGGAGCTAGTGACCTGAAAGCGAAGGCTCGACGGTGGGATGAGAAAGCTGTGGACAAACttaaggaaaagaaagagaaactaACAGAGGAATTGAAGGAACAAATGAAAGCAAAGAGAAAGGAGGCAGAGCTCAGGCAGGTCCAATCTCAGGCTCACGGGCTGCAGATGAGGCTGAAATATTCTCAGAGTGATCTGGAACAGACAAAAACCCGCCACCTCTCACTGAACATGCAGGAGAAATCAAAGTTGGAGAGTGAACTGGCAAATTTTGGCCCACGGATAAATGACATCAAACGAATCATCCAATCACGAGAGAGGGACATCACAGAGTTAAGAGACCGCATGAATCTGGTGGAGGATGAGGTCTTTGTTGAATTCTGCCAAGAGATTGGTGTGCGAAATATCAGAGagtttgaagaagaaaaagtaaaGAGGCAAAATGAGATTGCCAAAAAACGACTGGAGTTTGAGACACAGAAGACCCGTCTAGCCATCCAGCTTGATTATGAGAAGAACCAGTTGAAGGAGGATCAGGAGAAAGTGATGATGTGGGAGCAGACTGTAAAAAAGGATGAGAATGAGATTGAAAGACTTAAAAAGGAGGAACACAGGCACATGAAGATCATTGATGAGACAATGGCACAGTTACAAGACCTGAAGAACCAGCACCTCACTAAGAAGGGAGAGGTAAATGACAAGAACCGAGAGATGGAGGAGATCCGCAAGAAACTAGGATCTGCCAACAAAGAGCTGACCCAGCTGCAGAAGGAAGTAACTGCCATTGAAACTAAACTGGAACAGAAACGCAGTGACAGACACAACTTGTTGCAAGCCTGCAAGATGCAGGACATCAAACTGCCCCTCAAATCAGGGACAATGGATGACATCAGCCAGGGCGAGGGAAGTTCACAAGTTGAGGATTCCATCAACAGTCCGAAGGCATCAAGCTCTGTACATGCTAAAGAGGCCCTCATAGAGATTGACTACAGCAACTTGAATGAGGACCTCAAGGATGCTTTGTCAGAAGAAGAGATCAAGGCAGAGATGAACACCCTACAGCAGAGGCTGAACGAGCAGCAGAGCATCCTGCAGAGAATCAGTGCTCCCAACATGAAGGCCATGGAGAAACTCGAGAGTGTTAGAGACAAGTTCCAGGAGACCAGCGATGAGTTTGAAGCTGCCCGGAAAAGagcaaagaaagcaaaacagGCCTTTGAGCAGATCAAGAAAGAGCGGTTTGACCGCTTCAATGCTTGTTTCGAGTCTGTTGCCACCAACATTGATGAGATCTACAAAGCACTGTCACGTAACAGCAGTGCACAGGCATTCCTGGGGCCAGAGAACCCAGAAGAACCATACTTAGATGGAATCAACTACAACTGTGTGGCTCCAGGAAAGAGATTCAGGCCCATGGACAACCTGTCTGGAGGAGAGAAAACTGTGGCAGCTTTAGCTCTTCTTTTTGCAATTCACAGCTACAAGCCTGCACCTTTCTTTGTCCTCGATGAGATTGATGCTGCATTGGATAACACCAACATAGGCAAGGTGGCCAACTACATAAAGGACCAGTCAGTACAGAATTTCCAGGCAATTGTTATTTCTCTGAAAGAGGAGTTCTACACAAAAGCCGACTCACTCATAGGAGTTTACCCTGAGCAAGGAGATTGTGTCATCAGCAAGGTGCTGACCTTTGATCTTTCCCAGTATCCAGATGCCAATCCCAATCCTAACGATTAGGTTGTGCTGGTCTAAATTTATTGGTAGACAGCTAAAAGAATGATcagtagcatttttttaaaaaacatgattataatCATTGatgttaacagatttttttttatttaaattgtttctgATATGTCTACTGTATTATATTCCACATAGTGTGCATGATTGTATACGTATTAATATTCTGTGTTCTGTGAATATTACATACAATTGAACAGCTTTTCATGTTCTGTCAGCTGGAAAGTCTAGATAATAGGTAATGTTTTGTCTGCACTGTATCAAAAGCTGCCTATATTGTCAAGTGTGCCTTGTGGATGATTCGTTCATTCAGTAGAATGTGGAATAACCAGTAcaattttttgttgtaattttgtcTTCATGGGAAAATGTGTTACGTAAACTGtattcaaagtaaaaataagaGCTTACGGCACTTTCCAAAAATATGGTATACTTTGGTGTTCTATGACATTTGCGCAGGATTAGAGGCATAATTCTcatgcttttttcccctcccaaattaaaaaaaaaggcacttcCCATTGAtctctttctttaaataaaacttagTTTGGTTTTCAGTGATTGATAACCAACATTTACCAAACGTATCTTATTTCCCCCAAAAGAAACCTATTTCTTCCAGAAAAAATGTGTGCTTtctaaaatcaaaaatgtacagaaaactTGACGTTCTGTGTCTAACTtatgtaaaaacttttttctctCATAATTATGAGCATGTCCTATGATTTGTCACaattttgatgattttcttttcaaaattgtTATTTGCCTTAACATGTCTATTATgtggaacattttaaaaataaaaatctgaaaggGTCCCTATACTTGGCGGCCAACggattttcctttttaaaactagaaaaccAAAATCGAGAACCGAGCGTTCACTCgttttttgtttcaatattgaaagtggaaaaatgaaaaataaaagcttctgTTTTGTACCCTGTTAATGGAAAGTGCCATAACTcaactgtcatttaaaatgttaaatggaacaaaaataaacacgaaaacaagacaa

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0006281 DNA repair biological_process
GO:0008278 cohesin complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234182 lncRNA upstream 529192 15964752 ~ 15965764 (+) True G158117
TU234180 lncRNA upstream 545535 15896647 ~ 15949421 (+) True G158115
TU234177 lncRNA upstream 557085 15935131 ~ 15937871 (+) True G158113
TU234176 lncRNA upstream 557777 15934939 ~ 15937179 (+) False G158113
TU234169 lncRNA upstream 613064 15880663 ~ 15881892 (+) True G158110
TU234628 lncRNA downstream 33938 16539536 ~ 16539832 (+) True G158423
XR_006247787.1 lncRNA downstream 40243 16545841 ~ 16573057 (+) True LOC122328367
TU234640 lncRNA downstream 43641 16549239 ~ 16549606 (+) True G158430
TU234644 lncRNA downstream 49819 16555417 ~ 16555642 (+) True G158434
TU234650 lncRNA downstream 95108 16600706 ~ 16601288 (+) False LOC122328571
XM_043224303.1 mRNA upstream 4877 16445121 ~ 16490079 (+) True l1cama
XM_043224315.1 mRNA upstream 55682 16403912 ~ 16439274 (+) True huwe1
XM_043224645.1 mRNA upstream 134142 16353725 ~ 16360814 (+) False zgc:153867
XM_043224309.1 mRNA downstream 324 16505922 ~ 16510329 (+) True srm
XM_043224310.1 mRNA downstream 7509 16513107 ~ 16514904 (+) True LOC122328557
XM_043225329.1 mRNA downstream 24274 16529872 ~ 16539021 (+) True LOC122329124
XM_043224316.1 mRNA downstream 76372 16581970 ~ 16607408 (+) True LOC122328571
XM_043224069.1 mRNA downstream 111571 16617169 ~ 16619703 (+) True LOC122328394
TU234237 other upstream 411427 15983670 ~ 16083529 (+) True G158152
TU234249 other upstream 471562 16022199 ~ 16023394 (+) True G158162
TU234236 other upstream 486110 16007644 ~ 16008846 (+) False G158152
TU233395 other upstream 1190406 15300704 ~ 15304550 (+) True G157620
TU233466 other upstream 1498811 14992350 ~ 14996145 (+) True G157656
TU234659 other downstream 115600 16621198 ~ 16664314 (+) True G158446
TU234708 other downstream 225748 16731346 ~ 16731899 (+) True G158486
TU234761 other downstream 576607 17082205 ~ 17082559 (+) False G158524
TU234762 other downstream 576607 17082205 ~ 17082655 (+) True G158524
TU234757 other downstream 599900 17105498 ~ 17171839 (+) False G158523

Expression Profile