RNA id: XM_043224307.1


Basic Information

Item Value
RNA id XM_043224307.1
length 3406
RNA type mRNA
GC content 0.43
exon number 8
gene id ribc1
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16488226 ~ 16505803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAACAAGAGGCGACCAATGGCAGCTGGCTGACGTCATCAACAAGCGCGAGGACGGGGCATGTCTGTGCAAGCATGGTTGATTGTGCTCAGAACATGTACAAGGCTGATTTACCCGTGGATGAGTCTGCGCAGCGGGTGGTGGAACGGCGTCGGGCCGCAGAGGCTGAACGCAAAAACCGAATATTCAGCACGAGAAGTCGAGTAATCGGGGTTGACCTGCACGCGCTCCACAAACAGCGGGAGGAGAAACAAGAACTGCTGGAGATGGAGAAGCAGCGGGACATGGCTCATGATCTGTTGCGCTTGTCCCTGGATGAAATGGTAATGCAACAGaataaagaggaagaggagtTGCGAAAAGAGTTGGCTCAGGACCTGGTCCGATATAGAGCAATATATCAACGTGCTGAGGACAGCCGTGATGCAGATATCAACTCTAACCGACAGGTGGCGCCAGACGCCAGTATTTCTGTGTCGGACTCTGCATTGGGACCCGCCAGTATGCAAGTGTTTTTGGGAGAAGGagttaaagaaaaagaaaagaaaagagctcAGATGGAAATGAATGAGAGAAACCTGAGAGCTCaaaaggaggagagagaaaaacaagaaagagaacaaaaaaacagagagCTGCTAACCGGCAGGGAGTTGGTGGAAAAAGACCTTAGGGCAGTGAAGCTGAATGTCCTGGAGGAAGAGTGCAAAAGAGCGGCACACATTGCACTCAGTCATTACAATCGAGCTCAGGCTGAGGAGAGGATGGAGAGGGAGCAACAAGAGAGAcggaggagagagggagaggagctGGCTGAGGTGCGGTACatggtgacctctgacctcctgaCAGAGCGACCAGAGGCTGCCAAGAGAAAAAACGAATCCTCAGCAGAGGGTCCACGAGTCCTGACTGACCGCTGGAAGGGCATGACCCCACCGCAGATCAGTGAAATccacagaaagagagaagagcagTGTTTGGAGAAAGAGagactgagagagatggagaggcAGAGAGATGTGGCCTGGGATTACCATCTGACAGAGCAGGCCAGACAGCAGGAGAGAGACGATAATAGAGACAAGGAGttgcagagagagaggagaacgCAGCTCGATAAATACAATCAACAGCTGGCACGAGAGCAGCAAGCACAccaACACTACCTGGACAAGCAGCTGTATACCAACCGTCCCACAGTTCAGTACTTCACCCAGTTCAGCACAAGCTCTCGCTAAAGAACCATCTCATTCCATCCTCTCAGCTAATCATTCTCCTGCACGACAAATAAAGTGAAGTACTGGATTTCAAAGCACTGTGTACGTTTGACATTCATAAATTGGACTTATACAGTAGGTATTGCTGACAGTTgccattataaaatgttatatagtGATAGAATATTGCAGATGTAGATTGATTTAAGTATTTACTTACACTGGCTTATGGTGATGCAGATACAATTACAAAATCCAGGCAGCCCACCCTCACTTCCCTTTCAGTCCACAACACTGCAGGGGAATGTGACCAATACAGTCCCACAACCTCATTCATCTCgtccttcatttattttcacatcatATGcagtaacaaacaaaacatacaggAGGAATAAGAGACTATTATGTCAAGCTTATTTATGCATTAAGCCTACAGTTTAAGATGCATTATGAGCTTGAATGCGTACATTTGACGAGTAACAACAGAAACAGCAACGTTCGTCCGCTAGTCAAGCTTTAAACGGTGCCCTCCCACCCAGTTTTAGTTGCAGTAGCAGAGGGCAGTATAGTGGATATCCGAGAGTCGATTCACCTCCGAGCTCAATACACAGTCAAGACACTGACAAAATACACAAGTCGTCTAGCAGCAGTTCAGTTGAATATTGAGTTGAATATAATTTGCATCACTTCCCCCTCCTGTAAGAAAATAGATCTCTAAGAGACTTTTGTCCTGAGTGTGTCTGTACAGCTTTTGTGAGGGAGGCTAACACAGATCGGACAATCCCAGAGGGCTGGGAATCACTGCAAAAAGCCCGCCGCAAGACAGTGGTCTCAAAGATCTGAGTCAGCGTGTTTCTATTGCTCCCtggaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaataagATGACTGCGTCCCTCCTTTCACGCTGCCTCTGCAGCAATAGATTCTAATCAGATACGCACAATACTGCCATTCTTTAGCACTCGGGAAACTATAAGCGCAATCATGTTTCAATTagcttttttctgtctcttttatccaatcagctttttttcagaacctgcaacatttatttatcaaaggactttttttttagttatttaaaactatGCACTACTTGTCTACCACACTCAAATCACAACTAACAAGTTActctaaagtttaaaaaaaagttacaaaactcaaacaaatgtaaaaaacaatcaACAAGACACAGTTTTCAACGTCATAACAAACAATCTTTTGGGCtatatttacattcatctggaaattaagagattttttttctccctgtgCCCTTCTCTTGAGAAATACCAGATGTGCCATAGATTCTCTCAGTGCTATATTCTGCTATATTTGTTTATCAAACATCAGAtcaaataaaccaaaaagcaaaaaaaggaacaaatgcTATTTGGTATACTGGTATGGAACTATTCCCACCCAAACAAAGCATACATTCTGTGTAATAAGACAAGCCAATACATGATTGCATTTTACGTAACCAACCTAAACTGTGACGTTCCCTCCCACAGCCCTATCTAACTCAATACGACCTCAAATCTACGCACCTTACGTGTGTATTCTTATGGCTTTACACCAACAGGACTGCAAGAGAGAATCAGTACAGCTTAATACAATGCTGAAAACAAGAATTAAGAACACAGACATACAGAGGGAGGAGTAAACATGAGAGATGGTGGTGATTATGTTGTCGAAGGCAGGCACAGGAACCGATGGAGATGAAAGAGTATTATAATACTGTATTTGGCTAAATTGATAGATGCTTGTATGTACAGCTTGCTATAAACGATCTAGCGTCGTAGAGCCATTGCATCTCATGTATGTACATCTGTAATCGTAACTGAGGGGATGCCGATATGTATCATCTATTGAATCactacaatattacaatatatcaACATACAGGTGACTTAAAAGGTACTGTAAGCAAATTGTATGGAACGGAATTGTTTAAATGGTGGCAGATCTGAAGGTGACATTGTAATAGATTGTAGGAAATTCGCTGGAAGGATGGATTATGGCATcgagttaaaaattaaacatttcacaatatcaaGATGATTTTGTAATTTCTGAAAAGTGCTGGGCAATGTACAAACAGCTACTCTAATATAACTAAATTTAGCATTGTTAttcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234575 lncRNA downstream 44189 16443806 ~ 16444037 (-) True G158388
TU234531 lncRNA downstream 48946 16416925 ~ 16439280 (-) True G158353
TU234534 lncRNA downstream 48946 16421519 ~ 16439280 (-) False G158353
TU234569 lncRNA downstream 54597 16432961 ~ 16433629 (-) True G158383
TU234561 lncRNA downstream 63864 16423964 ~ 16424362 (-) True G158377
TU234622 lncRNA upstream 24249 16530052 ~ 16531096 (-) True G158417
TU234642 lncRNA upstream 47240 16553043 ~ 16553395 (-) True G158432
TU234682 lncRNA upstream 101658 16607461 ~ 16607960 (-) True G158462
TU234703 lncRNA upstream 218128 16723931 ~ 16724403 (-) True G158481
TU234705 lncRNA upstream 221635 16727438 ~ 16727715 (-) True G158483
XM_043225230.1 mRNA downstream 86521 16399805 ~ 16401705 (-) False tmem107l
XM_043225229.1 mRNA downstream 86521 16399805 ~ 16401705 (-) False tmem107l
XM_043225228.1 mRNA downstream 86521 16399805 ~ 16401705 (-) True tmem107l
XM_043225231.1 mRNA downstream 86529 16399805 ~ 16401697 (-) False tmem107l
XM_043224641.1 mRNA downstream 111418 16359689 ~ 16376808 (-) True c1ql4a
XM_043224027.1 mRNA upstream 35711 16541514 ~ 16545688 (-) True LOC122328366
XM_043224317.1 mRNA upstream 103675 16609478 ~ 16616339 (-) True LOC122328572
XM_043225250.1 mRNA upstream 168434 16674237 ~ 16677367 (-) True LOC122329052
XM_043225251.1 mRNA upstream 174503 16680306 ~ 16681688 (-) True LOC122329053
XM_043225103.1 mRNA upstream 326282 16832085 ~ 17007286 (-) True plxna2
TU234495 other downstream 129521 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 244831 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 318392 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 479311 16008106 ~ 16008915 (-) True G158231
TU234274 other downstream 770976 15699269 ~ 15717250 (-) False LOC122329227
TU234864 other upstream 670849 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 833464 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 1540135 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1725840 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 2241588 18747391 ~ 18754712 (-) True G159076

Expression Profile