RNA id: XM_043224314.1


Basic Information

Item Value
RNA id XM_043224314.1
length 2488
RNA type mRNA
GC content 0.43
exon number 15
gene id si:dkey-205h13.2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15502428 ~ 15506646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGCTGCAAGgTATTTTCAACATGGGTGGTTCTTGCTACAAgtGCACTCATCTCACTATCCACTCAGAATTGTATAACCAATTGGTTTGACCATGATGACCCAAATGGCAATGGAGACAGCGAGCTGTTGGCTGACCTTCTCAATTCATATCCTCAAGAAATATGTCCAAATCCGATCGCAATAGAGGCTCAGACCGTCTCCGGCCAATCAGCATCTCAAACAGGAAACATCTTTCAAGtATATAATCCAACAACCGGGTTTTCTTGTGTAAACGCAAACCAAGTAGGAGGGTTATGTTTTGATTATAAGGTGCGCTTCACCTGCCCGGAGGACTGGTGTTCAAAATGTAGGACACCCTGGTTTGACCGAGATAATCCCAGTGGACCAGGAGACTATGAGACGTTGTCGTTGACCCTGGTAACATATCCACTGCAAGTCTGCGCTCAGCCCATCGCTATCGAGGTGGCAACTATTAGTGGGACCCCTGCACTGCCTACTGGAAACAATTTCCTAGTATATGATCCAACGCAGGGCTTCGTTTGTGTGAACGCACAACAAAACGGAGGGTGTCAGGACTACAAGGTCCGCTTCACATGTCCAGTGAGTTTTTGCCATCCAAAGTGTGTAACCAGGTGGTTTGATTCTGACAACCCTAATACAAATGGGGGCGATTCCGAACTCCTGACTGTCCTCCTCAGTATGTACCCTAACGAAATATGTCAGAATCCAAACGGAATAGAGGCTCAGACCATCTCTGGCCAGCCAGCGTCTCAAACTGGAAATGTCTTTCAATCATATAATCCAACGACTGGGTTTTCTTGCATAAACGCAAATCAAGGAGGAGGAGTTTGTGCTGATTATAAGGTGCGCTTCACCTGCACAGAGGAATGGTGTTCAAAATGTAGGACAACTTGGTTAGACCGAGATAACGCCAGTGGAGGAGACAATGAAAGGCTGTCATTACTGCTGATAAGATACCCACTACAGGTCTGCGCTCAGCCCATCGCCATTGAGGTCACAACCATTAGCGGGACCCCCGCACTGCCACCTGGAAACATTTTTGTAGTATATGACCCGTTGCAGGGCTTTGCGTGCGAGAATGGAGCTTGTCAAGATTACAGGGTCCGCTTCACCTGTCCATCGAGTTTCTGCAGAACACAGTGTGTAACCAGGTGGTTTGATTCTGACAACCCTAACACAAACGACGGCGATGCTGAACTCCTCAGTGTCCTTCATAGTATGTACCCTGGTCACATCTGTCCGAATCCACTCGGAATAGAGGCTAAGACGGTTATCTCTAACCAGCCTGCGTATCTAACTGGAAATGTCTTTCAAGTATATAATCCAACAACTGGGTTTTCTTGTATAAACTCAAACCAAGGAGGAGTGTCATGTTCTGATTATAAGGTGCGCTTCACTTGTCCAGGGGACTGGTGTTCAAACAACAGGACAGCCTGGTTTAACCAAGATAATCCCAGTGGACCAGGAGACTATGAGACGCTGTCGTTAACCCTGGTAACGTATCCACAACAGGTTTGCACTCTGCCCATCGCTATCGAGGTGGCAACCATTAGTGGCATCTCTGTGCTGCCTGCTGGAAACAATTTTCAAGTATTTGATCCACTGCTGGGATTTAAGTGTGTGAATAATCAGCAGACTGGAGGGGTCTGTCAGGATTACAAGGTCCGCTACACGTGTTAGTGCGAGAGCCGTGTTCTCCCAAACTCCTCATATTGTAGCCATAACTAACTGTATATTTTGTTAAACTAAgctaagaaaaaagaaaaagacataaataattaatagtacAATAAACGTTTGCTTGCATTGCCCCCTGGCCTCAGTTCATGTTGTAATTGTGTTGTGGAATACTTTGTAAAAACACTGGAGTGAATTACATAATTCGATTCAGTACTCTATTGTTATTATGGTCTCTGCACTTGTGCACACATCTTGTTCGTTCCAACAGAATCAGATTTAAGTCCATTTCGCTTTCAGTAACTTCTGGTTAAAATATGTggccaagaaaaaaaacaggttgtGGAAATTAAAAATTGGAGAAAGTTAAACAGATgttattataacataataaaataattcttgaGGTGGCAGTTCTATTATACCTagacaaattattatttttttcatcttatgGGTTTTTTCATCTTAAACTTTCTGTGATGTATAACTTTTCATTGTCGTGTGAAGGCACTGAACTCATGTTcctgtattcttttttttctgtaacctCGTCTTCAGCGAGGCTGAATGCTTGAACAACCTTATCGttatctgttttttattataaagcgctaattacttttatatttctttattttgatgtgcttAAGGAACCATTGGGCTATGCTATATAGAACCACTGAATCATTGGCCTAAGCTAGATTTTATGTGTCAAGCATGAGTTGCAACCATCTTTAACTCTATAGAGATTGTGGTTTGTGGTTTTATATTTTcgaaatgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234059 lncRNA downstream 24659 15476487 ~ 15477769 (-) True G158024
TU233990 lncRNA downstream 163585 15210228 ~ 15338843 (-) True G157984
TU234037 lncRNA downstream 205792 15295888 ~ 15296636 (-) True G158019
TU234028 lncRNA downstream 298478 15202366 ~ 15203950 (-) True G158014
XR_006247855.1 lncRNA downstream 312790 15188148 ~ 15189638 (-) True LOC122328921
TU234264 lncRNA upstream 97202 15603848 ~ 15607080 (-) True G158174
TU234271 lncRNA upstream 115296 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA upstream 174240 15680886 ~ 15681872 (-) True G158188
XR_006247888.1 lncRNA upstream 193125 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA upstream 193125 15699771 ~ 15717244 (-) False LOC122329227
XM_043223970.1 mRNA downstream 12160 15479040 ~ 15490268 (-) False tmem269
XM_043223969.1 mRNA downstream 12160 15479040 ~ 15490268 (-) False tmem269
XM_043223972.1 mRNA downstream 12161 15479040 ~ 15490267 (-) False tmem269
XM_043223973.1 mRNA downstream 12162 15479040 ~ 15490266 (-) False tmem269
XM_043223971.1 mRNA downstream 15888 15479040 ~ 15486540 (-) True tmem269
XM_043225304.1 mRNA upstream 4309 15510955 ~ 15598026 (-) True hspg2
XM_043225288.1 mRNA upstream 104969 15611615 ~ 15620804 (-) True galnt6
XM_043224806.1 mRNA upstream 115835 15622481 ~ 15659407 (-) False adcy6b
XM_043224803.1 mRNA upstream 115835 15622481 ~ 15657947 (-) False adcy6b
XM_043224802.1 mRNA upstream 115835 15622481 ~ 15657947 (-) True adcy6b
XR_006247853.1 other downstream 28051 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 912835 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1171644 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 2220101 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 2285020 13141078 ~ 13217408 (-) True G157367
TU234273 other upstream 192623 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 192623 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 501460 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 637187 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 734164 16240810 ~ 16243395 (-) True tac3a

Expression Profile