RNA id: XM_043224327.1


Basic Information

Item Value
RNA id XM_043224327.1
length 2544
RNA type mRNA
GC content 0.42
exon number 7
gene id pcmtd2a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9543486 ~ 9548342 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGGCccatattttgtgtttgtgtgcgtgacGTCACGGAGTCAGCTGGCCAATGTTTACATCCAGCGCTGCTCGCCGTGAACGTTTATGGGAAGAAACCGAGCGCTAGAAACAACAGGAGACTGTTAACCGAATGGACAGCACCAACAGACCGTAATCAGGGTGTTTTAGGATTTCAGACGATTCAGCTCGGTCGACTGTGAAGTCGTCGGGGTGTTTCCGTGACGAGTTTCTACCCAAAACACCTCCATCCCGACATTCTCCGTCTTTGTCTTCGTTCGCGTCTACTTTTTGCAGAGCTAAAATGGGAGGTGCAGTCAGCGCTGGGGAGGACAATGACGAGTTAATTGACAACCTGAAGGAGGCTCAGTACATTCGCTCAGATCTGGTTGAACATGCGTTCAGGGCCATTGATCGTGCTGACTACTATCTGGAAGAATTCCGCGACAGTGCCTACAAGGATCTGGCCTGGAGACACGGTAACATCCACCTCTCTGCACCCTGTATCTACTCTGAGGTGATGGAGGCTCTGGACCTGCAGCCTGGCTTGTCCTTTCTTAACCTGGGCAGTGGCACAGGCTACCTCAGCACCATGGTGGGACTTATACTAGaaaagaaaaataattacacagcTTCAGAGCAACAtcaggGACCATTTGGTGTGAATCATGGTGTGGAATTACACGAAGATGTTATAGAATATGCTTATCAGAAGCTGGACTTCTTCATCAAGACAAATGATAGTTTTGACAGatTTGAGTTCTGTGAGCCTTCCTTTGTGGTTGGCAACTGTCTGGAGATTGCCCCTGAAAGCAGACAGTATGACAGGGTTTACTGCGGCGCAGGGGTCCAGAGAGAACATGAAGACTACATGAAGAAGCTGTTGAAGGTTGGCGGCATCTTAGTACTGCCCCTGGAAGAAAAGCTCACCAAAATTACTCGGACGGGATATAACACATGGGAGACGAGAAAGATAATAGCGGTTTCTTTCGCACCACTTGTGCTCCCTAAACACAGAGAAAATGGGAAACCAAGAGCAGTGTCTATACCTGTCATGTTTGAGGTGCGGAGTCTTCAGGATCTGTCCCGCATCTCCATCCGCCACATTCTAAAGAAATCCGGGTCTGGATCCTTGCCACTACCACGGAGAACTGGATTGAAGCGAAGAAATCACCTTAAACAGAGACGAGAGCACCGTGACACCCCTCTTCTGACCAATAGTTATTTGTTCATGAGTCGCTTGATTCCCGGACCCAtggacaacaacaacaaccagtCATCCACAGACaatgaggatgaagaagaagacTGCAGAAGGGTTTGTGAACAActagaagaaaaagaagagaatgaGAGAAGGAATGAGGGCAGTGTTTTGGTGATAGAGACTCCAGTAAACCTCTTAAGAGAGAGGATCCTTAGCCTGCCTTTGCCAGAGCCTCTCAAGATGTATCTTCTTTACTACAGAGAGAAGTAGACTTCTCCCTCCAGTGAATAGTCTGTTGTAAACGTCTCACATCTACCTAGCACTGTCACATTAAGAATCCACTTTTTGCATTAACCCGATAACCTTTCTCATAGAATTTCACCACTCTTTGTTCAGCCAAGTCAGGTGGCACAGatacttcattttatttatctatagaGGAAAATTCTCATTTGGTTTATTGCTGGATCTGGATTCACGGTCTAGAATGCTAACTCAATCATGGAATCAAGAAACATtgaaaacaaatttattaatcTACGTTTCATGTTATTTGTGCAGTGACATTGTCAGATGGACATTAGTGGCTAACAATTTACTAAATCATAAATGCAGTGTATTCGCACTTGTTTTGTGAGTTATGTAACATCTAGTTTCAGTTCATAGATTTACTATGAAAAGTGGTTCTACTGGTGTATGGATTTGTAAAAAACGTCTAATTGTGTGCTGACTTACACTTATTGTGGGAAAATACAATGGCACGTTTAAAAGTGTTGATTGTCCAACACAATCAGTGTTGTACAATTTCAGGGATTTCAAGATGAAAGACTGATTATCTGAGATGTTTTGccaatttgaaataatattggGTTTGTACCGTTTTCAGGGccttttcatttgctttttgcTATATAGAAGTATAAAAGGTATAGTCTATAGTTGTGTAACAAGTTATACGATGGTGCTCTGAATTGTGGTAATGCTCTGATGTGTACTTAGTCCAGTGATGTAGAATGCACTAATTGGAAAAAAGCAACCCGTtttgaattatgcatttatacCATCTATATCATGACTAAAATCCTTCACCTTTAAAATGGTcagatattattttcattatgcaAATGAAAGTGTGCATGTGGCATACAGTTAACAATGAGGTGCCAAATGTAGCAAAGACTAGTGGGTCAAAACTGACTTGTAAAtcaatttttgttgtaaattcaGTTTTTGGAGAACACAAACCAAagtattatgtatgtattttaaacaaactcaGACCGTTGTCTCTgcaaacatttaatgtaaaattaaataaagtctaAACACTGATAACA

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231000 lncRNA downstream 354589 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 389984 9153080 ~ 9153502 (-) True G155968
TU230977 lncRNA downstream 446223 9079533 ~ 9097263 (-) False ctnnbip1
XR_006247890.1 lncRNA downstream 470542 9070384 ~ 9072944 (-) False LOC122329247
TU231104 lncRNA upstream 53620 9601962 ~ 9602477 (-) True G156051
TU231107 lncRNA upstream 59146 9607488 ~ 9607948 (-) True G156054
TU231109 lncRNA upstream 63908 9612250 ~ 9612596 (-) True G156056
TU231365 lncRNA upstream 129919 9678261 ~ 9815494 (-) True G156235
TU231378 lncRNA upstream 233766 9782108 ~ 9831125 (-) True G156245
XM_043225411.1 mRNA downstream 15351 9526592 ~ 9528135 (-) False thap3
XM_043225412.1 mRNA downstream 15356 9526592 ~ 9528130 (-) True thap3
XM_043225257.1 mRNA downstream 26770 9215785 ~ 9516716 (-) False camta1a
XM_043223962.1 mRNA upstream 782 9549124 ~ 9562123 (-) True myt1a
XM_043224521.1 mRNA upstream 67191 9615533 ~ 9621872 (-) True LOC122328677
XM_043224520.1 mRNA upstream 74111 9622453 ~ 9633367 (-) True osbpl2a
XM_043224479.1 mRNA upstream 114071 9662413 ~ 9674637 (-) True LOC122328660
XM_043224540.1 mRNA upstream 213357 9761699 ~ 9764798 (-) True si:dkey-261l7.2
XR_006247818.1 other downstream 333522 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 616876 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 623761 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 623761 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 915095 8625758 ~ 8628391 (-) True G155827
TU231373 other upstream 253443 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 253443 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 283786 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 283786 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 682204 10230546 ~ 10231919 (-) False ankrd52a

Expression Profile