RNA id: XM_043224344.1


Basic Information

Item Value
RNA id XM_043224344.1
length 2873
RNA type mRNA
GC content 0.42
exon number 8
gene id bgnb
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11881386 ~ 11900643 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCAGAAGATATGAGAGGAACACACATAGATGTTGGCATGTCAGGATGAAGAATGGGATTCCACTGGATACTTTAGGCTTTAATGCCTACCTTGGATGAACTGATATTTAGCAAATGTTTGGATCAGCGACATATGGTCAGCTCTGGGAACTGTCAGGCACCGTGAcaaatttttaatgtaaatgtctgtTTGTAGTCATTTCAGAGATCTTTCTGTTGCCTCAGACCTTGACAACAAGCGTGAATGTTCACAGAAGATGATTGAGGAGTAGCCAAGGGGAACGGCAAAAGTATCCATGCTCATTACTCAGTTAATGACACAGACGCTGTGTGAGATGGGAGACATAAAGGACTCAACGGACACATTTACATGAGCAGCGTTTGTGTGAGATCCCTCTAAGCTTAATGGAAGTCTTTACTgtctgtgtgtgtgagtctctgtATCTCTGCGATGTTCCCCTGTCACTCTCTCCTGCTTCTGCTGCTCAATGTCTGCAGCCTGACTGCTCCCTCATTGGCTCTGCCTTTTGAGCAGAGAGGATTCTGGGACTTTGCTATGGATGGAGAAATGGGAGATTTGACGACCGTAATGATGAGAGATGAAGAAGGTTCTGCTGTGGAGGAGCTGCCGCCGGATGTGTTTTCATGTCCCTTTGGCTGCCATTGTCAGCTCCATGTGGTGCAGTGCTCAGACCTGAGTTTGATCGCAGTGCCCAAGGAAATTCCCAGAGACACCAAACTCCTGGACCTGCAGAACAACCGCATCACAGAACTGAAGGAGAATGACTTCAAAGGACTTTCTAACCTCTATGCTCTGTCACTGGTCAACAACAAGATCTCCAAAGTCCACCCGCGAACCTTCGCACCCCTCCTACACttaaaaaagctgtatttttccCATAACCTCCTGACAGTGGTACCCAAAAACCTTCCCCCATCCCTGGTAGAGCTGCGCATTCATGACAACCGTATTAAGAAGGTTGCAGAAGGAACGTTCTCTGGTCTGGGCAGCATGAACTGCATTGAGATGGGCGGAAACCCTATTCAGAACAGCGGCTTTGAGCCTGGTGCTTTCAAAGGCCTGAAACTCAACTACCTGCGCATCTCTGAGTCCAAACTCACTGGAATACCAAAAGACCTCCCTGACAGTCTTCATGAGCTCCACTTGGACAATAACCAGATCCAGGCCATTGAACTAGAGGACCTGAGCCGCTATAAACACCTGTACAGATTGGGTCTGGGTTTCAACCACATCCGGATGATTGAGAACGGCAGCCTATCATACGTCCCTAATCTCAGGGAGCTGCATTTGGAAAACAACCGGCTGACCCGCGTCCCCATGGGTATGCCAGACATGAAGTACCTGCAGGTGCTCTACCTTCATTCCAACAACATAAGTCGAGTGGATGTTAATGACTTCTGCCCTCGGGGTTTCGGCATGAAGAGGAGCTTCTATAATGGCATTAGCCTCTATGGCAACCCGGTTAACTACTGGGAGGTGCAGCCCGCCACCTTTCGCTGCGTTGGAGACCGACTGGCCATTCAATTCGGAAACTATAAGAAGTAGAGaatggatgaaaagagagatcTGGGGACAAATAACAATGCTGGaattaaaacagaacagaaaaaactTGGAGAAAGTGGGCCAAAATGGTGTCAACAAACAGTATTTGcgaatcatttttattatgcatcttTGGATATATTCGTTTATGAAGCCTAAAGGTTGACACCAAGTATGTTAACTATACTGATAAAGATAGCACAGTCCACACCGCGACTATAACAATACGGTTTGTTGGAATAACTATCAGGCTGATTTTATTCAACTggtgaatgataaaaacataacagccaatcagaatccacaTTTTAAAGAGCTCAAGTATTTAAAGGGGCAGACGGCAAAACTGCTGCAGGTTTATAATGAACAGAACGTAACCATCTGtgaatgttaatataattatcgttatctttatagttatcataCTTGATAagaacagcaataaaaataagtaataagtttaaatttaaactcGCACAACTGGCTCAAAACCattgttttacagtaaagtcTTAACATTATCAATTCACTTTTTAAGGGCTCTTTGTTTTCTCGacacttttataataatattgatatGTACTGttatattgtgattattttatattagttaatgttgttttttaacagtGAAGTTTGGATGGGATGTTGAAATAGAAAGGTTAAATCTAGATGTTAAATCATGGTGCTTATAATAATCTGtgttgtttgtaaaaaaaaattgtagcttgctttttttctccttttttaccTTGCTTCCTTGCTTCAGGGGTCTTATTGTTGTGGGAGTACTTTTAGGGCAATGGATTCAAATTTCATTCAGCCGTATGCTTCATGCTCTTACCCAGCCCTTTTGGGTTAGAGGCTGATTCAGAAAAGGATTGTAATGCTATGTTGTTTTGCACAGTTTCTTTATGAATTTCAAATCTTTTCTTTGTAGCGTATtgtttttctcatgttttcttTGGCAGTGACCCTGCATGCATTTAGGCTAGTGTGCCGCACACTACTGCATGTCCCAATAAAAATATGTCTTCAGGAGCAGACGTGGCGTACCATCGTGGTTTGAAAGCTGTGACTAATAAAACTTGAGTTAACACGAGTTTGATGAGTtcagtgaaataaaacatttgcagtGCTCTCTTTGTTAAACAAGAAtgtctcctcttttttttttttcaataaagccAAATATTGATTGATAGCATTATCGAGCACATTGTCAGTGGGTCACTCTACTTGATGCAAACTTTACAAAATTACAGATTTTATGCAcgacaaaaataaaacctacaATTAATAAAA

Function

GO: NA

KEGG:

id description
K08118 BGN; biglycan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232457 lncRNA downstream 29676 11793603 ~ 11851710 (-) True G156972
TU232440 lncRNA downstream 30804 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA downstream 99020 11781567 ~ 11782366 (-) True G156971
TU232436 lncRNA downstream 118363 11762440 ~ 11763023 (-) True G156962
TU232213 lncRNA downstream 341341 11539623 ~ 11540045 (-) True G156812
TU232469 lncRNA upstream 162460 12055246 ~ 12061368 (-) True G156978
TU232458 lncRNA upstream 168661 12061447 ~ 12064715 (-) True G156973
TU232460 lncRNA upstream 168661 12061447 ~ 12064715 (-) False G156973
TU232520 lncRNA upstream 206181 12098967 ~ 12099726 (-) True G157012
TU232550 lncRNA upstream 258574 12151360 ~ 12156300 (-) True G157035
XM_043224342.1 mRNA downstream 869 11868442 ~ 11880517 (-) False b4galt3
XM_043224341.1 mRNA downstream 869 11868442 ~ 11880517 (-) False b4galt3
XM_043224340.1 mRNA downstream 869 11868442 ~ 11880517 (-) True b4galt3
XM_043224345.1 mRNA downstream 14815 11861887 ~ 11866571 (-) True ccnq
XM_043224699.1 mRNA downstream 23419 11812945 ~ 11857967 (-) False atp2b3b
XM_043224347.1 mRNA upstream 13913 11906699 ~ 11919506 (-) True si:dkey-32e6.6
XM_043224773.1 mRNA upstream 32159 11924945 ~ 11933113 (-) True tktb
XM_043224067.1 mRNA upstream 41541 11934327 ~ 11936611 (-) False lrrc23
XM_043224066.1 mRNA upstream 41541 11934327 ~ 11936611 (-) True lrrc23
XM_043224064.1 mRNA upstream 44050 11936836 ~ 11940344 (-) True si:dkey-32e6.3
XR_006247884.1 other downstream 79754 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232414 other downstream 134766 11741400 ~ 11746620 (-) True LOC122328546
TU232479 other upstream 30058 11922844 ~ 11924650 (-) True G156985
TU233029 other upstream 1248292 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1387470 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2434180 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2688308 14581094 ~ 14589593 (-) True fitm2

Expression Profile