RNA id: XM_043224351.1


Basic Information

Item Value
RNA id XM_043224351.1
length 6496
RNA type mRNA
GC content 0.51
exon number 27
gene id tns2a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6370216 ~ 6414435 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTTTTGATTTAATGGGCATATTCTCacctttgtttacatatgtgtgctCACAAGAGACAGATGAGTGTGAACAGGcgaacatgtgtgtgtgtttgaatgagaGCCAGGAAAAGGGGAAGGGCCTCGAGTGAGCGGACGAAAACAGCTGCTCTTGTGTGCTAGAGAAACCTCATCCAGAGAGAGCGAGCGTGGAGAGACGGACCAGCAGGGTCCAGATCTCTATATGGGTTGTGCCCTGAGCGCGGATAGCTGTGGGGACGAGCCAGATTCTGTGCCCGTGAGAGGGTCTTCAAAGGGCGAGAGATCAAAGTCCAGGAGAAACATGAGGCTGACCAAGGCGGGGAAGGGCGAGCCCCACGTCTTTAAAGAAAAGACCTTCAAAAAGAAGCGGCAGTGTGGGGTGTGCAGGCAGAGCGTGGAGAATTTGGGCTCTTTTTGTCGAGTCTGCAAAACGGCCACTCATAAGAAATGCGAAGCCAAGATCAACACAGCCTGCATCCCAGCGCAGCCCTCAGAACTGAGAAGGGGAACGTCCTCCTCTAGACACATTCAGCATCTGGGCTCAACCAAGTCTCTGACCTACACCAAACAGAGGAACACTCTCCCGAGGAGCTTCAGTGTGGACCGGGTCATGGACAGAGTGATGGAGAGACACTATGACTTCGACCTCACGTACATCACGGAGAGGATCATCTCTGTGTTTTTCCCTCCTCTCCTGGAAGAACAGCGGTACCGCCTCAACCTCAGGGAGGTGGCAGCCATGCTCAAGTCCAAACACCAGGACAAGTTTCTGTTATTCAATCTGTCTGAGCGGAGGCATGACATCACCCGCTTGAACCCAAAGgtTCACGACTTCGGCTGGCCAGATATGCACGCTCCTCCTCTGGATAAGATCTGCGCCATGTGCAAAGCCATGGAGAACTGGCTGAACTCCGACCCCCAGCATGTGGTCGTTCTGCACTGtaagggcAACAAAGGAAAGACAGGTGTTATCATTGCTGCCTACATGCATTACAGCAAGATATCAGCAGGAGCAGATCAGGCCCTCAGCACATTGGCAATGAGGAAGTTTTGTGAAGATAAAGTGTCGTCCTCCCTCCAACCCTCTCAGAACAGGTATATCTACTACTTTGGAGGGCTGCTCTCAGGGGCCATCAAAATGAACAGCAGTCCACTCTTCCTCCATCAGGTCCTCATTCCTACCATCCCCAACTTCCAGGAAGATGGAGGTTTCTTCCCTTTCCTGAAGATTTATCAGTCCATGCAGCTTGTCTACACTTCTGGCATATAtgatcTGCAGGGCTCTGGGAGCAGACGGCTGATTGTTACTATTGAGCCTGCGCTGCTGCTGAAAGGAGACATCATGGTAAAATGTTATCACAGACGGGTTCAGTCCCCCGAGAGGGACTCTGTGTTTCGACTGCAGTTTCATACGTGCACCATTCACGGAGCTCAGCTCTGGTTCGGAAAAGGGGAACTGGATGAAGCTTGTTCAGATGACAGATTTCCCTCTGATGCCACAGTGGAGTTTGTGTTTTCATCTGGGCCTGAGAAAATTAAAGGGAAGGTTAGCCAGAGGAATGATCCAGCTGTCAGCGTGGACTATAACACAAATGATCCGGTGGTGCGCTGGGACTCTTATGAAAACTTCAATCAGAGAAATCAGGACAGCCTAGAGGATATTGCTCACACACGTGGGCCTCTAGATGGCAGCCTGTACGCTCAGGTGAAAAAGCGCCGCGCTGCAGGCTCCACCTCCCTGCCGTCCACTAATGGGAGCCCTGCGAGGAGTTCCGAGGAACGTCCGAGTCAGCTTCTGTCTGTTAGCACTGATTCTGGACATTCATCCGTCCCACCTGACCGACTCGATGAGCCGTCTCGACAGGCTCCACCTACTCAGCAAGAGAGGGAGGAGCTTGAGCGCCTGCTGGGTGGGATTGAAGGTGATGGAGGGAGAGATCGTGACCGAGAAACAGCCATTTTGGATGACGGTGATTCCTTGCCTCCTGAAAGGTCTGGGTCACTGAGGCTAGGCCGTTCATGCTCATGTCGGGTGGGCTACCGATCCCAGAGTTgtgctgagcctggatgtgATGGACTCCACCACTTATCCAATGGGTACTGCCTTGATCGTCCCACCACCACTAATGGACACACAGGGGCTCCTTCTCCAGGCATGCCATCCGTCATAGGGCTTTGCCAACACCACAGTGCCCATCCTCACCAATCCCTGCCACCGCCAGATCTGCTCTGGGACCGCCAACAAGGTCCACAGCACTATCTTCATCGCACTTGCTCAGAGGGGCCATCACGCCACCTGTGTCCGTATCCATCCCAAGAGATCAGTCCCCATCCACATAGTCTGTCACCCCGACTGCTCTGTAGGGCAGATGAGTACATTCCATacccccaccaccaccacaaccATCCACATCACCCAAAACCTAGCGGTCCCTACCACGATGTCATGATGATAGATGGCCTAGTGACACCTGGCTGCCTCTGTCGGGACTGCTGTCTACGGCGGGAAGATTTCCACACCCTCCGTTtagacagagaggagagaatACACTGGGAGAGGGAGGCAGATCTTCACAGGGATACTGGGTTAAGACGAGGCAGAGATACTGATATGCAAAGAGGGGCAGAGATATGGGACCGGGAGGCAGGGCTAAGAAGGGGCAGAGAAATGTCTCTGCACTGGGAAAGAGATAGAGAAGCAGAACTACAGTGGGAGAGAGAACGGGAGGCAGAATACTGGCACAGGAGGGCTACCGTATCCCCCTATGGGCCTCATGGCCATGAATTACCAGCATTTAACTTTGATCCACTTCCCGCAGGCCATCCTGCATACCCTGAACCCTCCCGGTCCCACTCTCATGCCCATCTGGATCTTAAATACAGCAGCAGTTCCAGTGGATACCAGACACCACATCAGACATGCCCTTGCTCCCCCTACCAGCAGTCACCTTCAGAGAGTCGTGGATATGCCTCGGGTTACCAGTCTGAGTCCACGTCCCCTCTCCCACCTCCCTCTGCCTCTTGCCCTGGCCCAGTGCAACATGCCAGTGCACCTACAGATAACCAAACAGACCCTCAGCAGTATTCGTCTGATACAAATACAGATTGCCCTGGTGCAGATAGCATAGGCTGGCGTAGTCACATTACCCATGGTTCCCTGCGGCGGACACATCGAGATCCAAATGCCCCATGTTCAACACCCTCTGATATTTCAGGACCTCCAACACCAGTACACACAAGCAGCCCCTTGCGAACCCAGGAAAGTCCAAGCCGTGAGTATGAGTCAAGAGAAGCAAACAGTGAAAGCAGTTTGGCCCACTCCCACAACAGGATGCACCCACCTGCCCTACAGTCCACCAGCACCAGTCTGGGATCTCGGCAAACTGTACTTTCTTCCAGTCAAGAGATTACTGAGATACACCCCTTTTCTGCCACACCCACCACTGCTCAACAACTCTCTGCCCATTCCTCGCCAACAACATCTTCCACTTCACAAATCTCAGCAGAACAGTCTACCCCTTTAACACCATCTTCAGAATCTACACAATCACAAACAAACACCTCACCTACTGCTGCTACAGTGCCGCCCACAGGGGAAATGGTACCACAATCAACTGAGACTGTTAAACAAGCACATTCACCAGGTCCCTCTTCTCCCATGCCGTCCAAATCCATCCCAGCTCACTTGCAGAGCAATGGAGTATCTCCATCTCCTGAATCAGACATCCCTTCTGCTTCTTCTGCCCCTGCATCCCTACAGCCGCTCACTGGCGAACACGAGAGCTCTTCTTCCCCTGAACCCCCAGTGCCTGGTTTCGCGACACTGGGTCGGAAGCTAATGTTGGGCTCTGAAATATCACTTCCTGCAGGACACAGTATAGACGGCAGCCCCAGCTCCACTCCCACCTTCCCTATTTCTCCAGCCTGCTGCAccccatctcctccgccaggcTCCTACTCAGGCTCCATCCCACAGCCTCCCCTTCCAGAAAAACGCCGCCCATCAGGCCAGCCAGGATCACCCAATGGGAGGTCTGGAACTCTGAGGGCATCCATGAGTCATCAGTCGTCTGGCCAACACCATGTTACATTCTCACCTTCAGTAGGAGAGCTGACTGTGCCCGCTGGACAGGGAGAAGTTGGTGTGGAGGGCGAGATGGCCAGCCGTGTCAGTGTGAAATTTGTGCAGGACAGCTCTCGATTTTGGTATAAACCTGGCATCTCCAGAGAACAAGCTATAGCAGCACTGAAGGAAAGAGAGCCAGGGTCCTTCCTCATCCGAGACAGTAACTCTTTCCAGGGGGCCTATGGTCTGGCTCTGAAAGTTGCCAGCCCACCCCCCAACGTCAATAACCATAGCAGCAAAGGGAGTCTTTCAGCACTGGTGTATCAGCATTCCATTACACCTATCTCTCTGCCCTGTGCCCTCCGCATCCCAGAGAAAGACCCAATAGGTGAAGTTGTGGAGGTTCAGCCGGTCAGTAACATGAGTACAGCTGCAGACCTTCTGAAACAGGGAGCAGCCTGCAATGTGCTGTACCTGAACTCCGTGGAGACCGAGTCTCTCACAGGACCCCAGGCCATCGCTAAGGCCGCAGGGGCCACAATGTCACGCAGCCCTCGGCCCTCTGCGACGGTGGTCCACTTTAAGGTGTCAGCCCAGGGCATCACACTGACAGACAGTCAGCGCAGGGTGTTTTTCAGGAGACATTATCCAATCAACAGCGTGACTTTCAGCAGTGTGGACCCACAGGACAGGAGGTGGACTAACTCAGACAGCACGACCTCTAAGGTGTTCGGTTTCGTTGCCAAGAAGCCCGGCAGCGTGGCGGAGAACGTGTGCCATCTTTTCGCGGAGCTGGACCCCGAACAGCCAGCGACCGCCATCGTCAACTTCATTAACAAAGTAATGCTGGCGCCGCAGAGACGCTAGGGCCCCGGGGACGAGGAGCACGAGGGGCACGGTTTATCTTCACGAGACCGGATCGTCAAGTTTCGAAGACTTTTCGGCTTCACCGTGATGCCAAAACGCATTAAAACCAAAACACGCTACAGAATGTAACCCAACTAAAGCCAGCAGTCCGATGCGGGTTCGCCTTTGTGGAGTTGTTTGGTGTTCGTGGGATTGTAAAAGACTTTTTGAAGTAAGCCTGGCAGCACGAGCACAACACAAAGCACTGACCCACGAATAAAACCAATCTGTTGCATGTACTGACGATGCGTGACAATCATCGCTTTAGAAATAGTGATGCCAGTTTGGTTTTTGAGTTTCGACGTACGCTAAATTACGGtcgaaaattattatttttttcaaaagccaAATTTCAGTGGCGTTTGTCCTCGTAGCTGAAAAAACGGCGTTGCCATGGTTACTGCTGGAAACTTATTTCAACcgcagtaaaataaataaataaataaaaggtaattGCGACAGCATCTCACaattataacttttttcttGCCATTTTAAGTTTCTATCTCTTTCCTCGGATCACCCCGTTTCTTCCCGTTATATCTTGTAGTTCCGACTTGTTTATTATAGCTCACAGAATTTCCACGCAATTCCGATTGCATCTCGCAACTCTGACTTATTCCTCGTAATCGTTTTCTTATCTCGCAACTCTGACTTATTCCTAATCGTTTTCTTATCTCGCAACTCTGACTTCCCCCGGTCCCGGGAGGAGAGTCCAGAAGGCACTTTGAGAGGGCAGCCGCCAAACGTGAGGGAATAAAGACTCCCGATTACCTTTGTTTGGTGGAACGAGCTTCGGTGGTTTCCGGTGTCTGCGAAGGACAGGGCAAGTTTCCGAGCGTCTGAGGCGgaggagcaggtggaggagcgGACGTAGTCCCGGTGTCGGGAAGATGTAAGCGTCGTGTAGTGTGAGGTCATAACGGAAGGCTGACGGTCACGTGACTATTACCCAGAGAGCGTTGGGTTACCTTTAGCGTAGGAAGGAGCTTGATTTCGTCCCCCTGTGTTGTGTATTTCATGCACTGTTcataaatagaatataaaatacgACAAGACAGTGGTTTATAAGCATCATATCCGACCGACGTGCCACTGCCTACCATATCGTGTAGTAAAACATTATATCGGAATGTAACCAAAACCGATTGGACAGGCGGATCTCCAGACGCTGTTTATAACCAAAGACGCGGCCGTTGTGTACTCAGTTACTTTAAGCtgtgccatttattttttacttaaccTTTATCAGCAAGTTACTTCTGCTTCGGGCAGATAGCAAGACGCGTTTGtgacttttaatatattttattctctaTTTTCTCATCGATCTTTTTATGTAgtaatatattttcacacatGCAGCCGAAATTAAAACCGTAAGAAGACTACGCGGAAGGATTTTGATAAGAAAAGTGGTTTTTAATTAccgtgttattttttttttcttcagtgtatgcacaagtgaaaaatataataaatgtaaagtcaTGGTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230114 lncRNA downstream 18391 6349007 ~ 6351825 (-) True G155388
TU230003 lncRNA downstream 178896 6191097 ~ 6191320 (-) True G155308
TU229923 lncRNA downstream 451053 5815311 ~ 5919163 (-) True G155254
XR_006247895.1 lncRNA downstream 707260 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 822508 5525041 ~ 5547708 (-) True G155238
TU230159 lncRNA upstream 70219 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 71004 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 74189 6488624 ~ 6499749 (-) False G155391
TU230127 lncRNA upstream 95280 6509715 ~ 6514093 (-) True G155392
TU230195 lncRNA upstream 197558 6611993 ~ 6612524 (-) True G155435
XM_043225147.1 mRNA downstream 48105 6315902 ~ 6322111 (-) True ppp4r2a
XM_043225234.1 mRNA downstream 187057 6136561 ~ 6183159 (-) False chl1a
XM_043225243.1 mRNA downstream 200599 6136561 ~ 6169617 (-) False chl1a
XM_043225240.1 mRNA downstream 200599 6136561 ~ 6169617 (-) False chl1a
XM_043225238.1 mRNA downstream 200599 6136561 ~ 6169617 (-) False chl1a
XM_043225115.1 mRNA upstream 7777 6422212 ~ 6434975 (-) False eif4ba
XM_043225114.1 mRNA upstream 7777 6422212 ~ 6434975 (-) False eif4ba
XM_043225113.1 mRNA upstream 7777 6422212 ~ 6434975 (-) True eif4ba
XM_043224782.1 mRNA upstream 36524 6450959 ~ 6453339 (-) True krt18a.2
XM_043224781.1 mRNA upstream 39718 6454153 ~ 6457919 (-) True krt18a.1
TU229892 other downstream 890397 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 915169 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1535696 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 2175218 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 316416 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 352173 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 359143 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 359143 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 359143 6773578 ~ 6822978 (-) False rps21

Expression Profile