RNA id: XM_043224359.1


Basic Information

Item Value
RNA id XM_043224359.1
length 6189
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC122328599
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10432764 ~ 10447218 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGTCAGATGCGTCAGATGAGAAGCGGCTGTAGGATCTACTGAAGAAGAAGAGGGGGATGGGGagaattgtttttgtgttgcatTCCTGCAGTgtgtttgacctttgacctcattGTTGTGTTCTCCTCGTCTTGCATTCCAAACCGAGGATTTCCTGCAGTATGCCAAAGGCTTCTGGGGCTCGCCTGTTCTTCGCCCTGTCTCTGTTTACCTCCGTTTAACCAGCGAGACGTTACAAAAAAACTCTCTGGAACGCCGCTGCTGCAACAACCGACAGCTTTTTAGGCAAGCCGTTCTACGGAAACGCGTGCGTCTTTGAACAGAGCGACTACGCAAGTTCTTAGGGCGAAAGGGAATCAAAGACCCGTTTGGTGTTGCAGCTAGCCTAGCACGCTAGCGGGCTTGCCGTATATCACGCACACGTTTCATATCCGCTGCAGAAATCCGCACCCGCGCGACAACGCTGAGGAAATGAAGGAcaaacagaagagaaagaaggagCGCACGTGGGCCGAGGCAGCTCGTATGGTTCTGGAGAATTTTTCTGATGCCCCAATGACGCCCAAACAGATTCTGCATGTCATCCAAACAAAGGGGCTCAAAGAAATGAGAAGTGGCACAGCTCCTCTAGCCTGCCTGGTCACCATGCTTCACTCTCAGGTCAGAGGAGACAGAGTGAAGAACAGTATTTTCTTCAAGCTTCCTGGAAGGATGAGTTTGTTTACTTTAAAGAAAAATGCACTTCAGTGGACAAAGAGCCCAACTGCAAACGAGTCTGGAGATGGGACCGGCACTCCTACAGCATCCACCACATCAACAGTTGAAGGAGCGGAGCAGGAGAGTTGTGACTCCACAGAAACGGCTGCTGCTAGTGGTGAAAATGATGCTTCTGTGGATGAGACTTCCTCCAGTGCTTCTTGCTCCACAGAACCACAGACAAGACTCAGTCGCTCCTCACAGTCAGGGAGACAAAGGAAGAAAGCTGTGATGATGCCCCGTGTAGTGCTCACTCCTCTCAAGGTCAACGGTGAACACGTCCCATCAGGAGCAGCGGGGAGGCGCAGGGAAGGCTCTAGGGGGGGTCCAGGCCCCACTCTCCGTACCCGCTCCGAGCTGGGCTGGAAACGCACCCAGCACTTCAAGAGCATACGTGGTCTTCGTTCAGGTCCCATGAAAAGGAATCGAGGGGGAGTGGAGGTGGATTTTGAGACTCCTGGCTCAATCCTTGTAAACACCAACATTCGCGCTCTCATCAATACGCGCACCTTTGCTGCTTTTCCTCCTCATTCCCAGCAGCAACTACTCCAGCTTTTACCAGAAGTGGACAGACAGGTTGGCCCTGATGGCCTAGCTCGGCTAAGCAGCTCGGCCCTCAATAATGAATTCTTCACTCATGCATCTCAAAGCTGGAAAGAGCGTCTAGCTGAGGGTGAGTTCACACATGAGATGCAGGTTCGCTTCAGGCAAGAGATGGAAAAGGAGAAGAAAGTAGAAGCATGGAAGGAGAAGTTCTTTGAGGAGTACCATGGCCAAAGgTCTGGGTTGACGAGAGAAGAGGCATTAAAGCTCACAATGAGTGATGCTGGAGATGTTGCCAGTGCAGTCCTCGATTCTGATTCTGCTACAGTGGCTACACCCAAGAGACGAAGTGTTGGAAGGAGACGGAGGGAAGGCCGTATCAGGCGGCGTTCACGTGCTGACCTCAGACGAAGAGCTCGGCGAACACTTTGCAAAACTGCAACAGTGGCTGTACCTTCAGCAGAGACAACAGAAAGCACTGCAACTCCAGATGTTGAACCATCTGTTGCATCTCCAGTCCCAGAAGCGACAGCAGTTCAGGGAGAGGTGGTCCTTCAAACAGACCTCGGACTGGAAGCTCCAGAAGAAAACCTTTCTGCAGAGGCAGTCCCCTCTCCTGTTCCTGTCCCTACACCTCCTCCAGCTTCTACAAGCTCAACCTGCGATGAACCAGAAGCCTCCACACGCCTGTTGCCTGAAGTACCTGAACCAGCTGTTGCATCCACTTCCTCtccttcctcatcctcctcttcaacgtcatcttcatcatcacccTCTTCTTCTCCCTCCTCTGCCTCAGAAAGACAGACTTTTGCTGCAAGCTCAgattcctcttcttcctcttcctcctccactGCTGCTGTTGCCACCGACCCGCTGGACGATGGGGCTTCGGTCATTACCACTGGTACAGCGGGCACTGGTGCAAGCAGCCGAGAGAGCAGCCCTGCTGCCAGCCCTGCCACAGCAAGTCCAGCAATTCACCTCAAGGAGCAAAAGAGAAGGCCAGACGAGTCCCAGGCCTTCACCAGCTTTCCCGAGAAAAGGGCGCGGCTGGATGAGCGTCAGTCCTTTCGTAACACAGTTGACTGTGTGCACTCAGAAAAGCCACAACCTACAACAGAGGAGCCCAAGGTCCCGCCAATCCGGATACAGCTCTCCCGGATCAAACCGCCCTGGGTCAAGGGGCCGCCAACGTACCAAATCTGTCCCCGCATCGTCCCCCCCAGTGAAGGGTCGAGGCGCTCTGGGACAGGGGCGCGCACCCTGGCGGACATCAAGGCCCGTGCACAGCAAGCCCGTGCCCAGCGGGAAGCCGCTGCTGCTGTTGCAGCCTCTGGAGATGGGGGAGGGCCTGGGGGGAGCGGCCCGGGGGGTGGTACTGGGATACCGGATCGCTCCAGCGGGAGGCGTTCGAGAGAACACCCAGGGCCGGTTGAacctggaggaggaggaagaagaggaggaagagttgATTTGGAGGAGCAGGAATCGCCTGCGAGCTCTCATTCGTCTGGAGCACAACTACAGCTGTCCAGTGTAGACTCAACAGACAGGCCTCAAACCTCCACCCCACTTACCGAACCATCGCCTTCCTCTGTGTCTTCAAACCCATCTTTACCACCATCTGAGTCTCCGAAAACACTCACGCTATCGCCACCTGCAACTGACAGCCCTGCTTCCCAGGATCAGGTGGAGGAGATTTGTGGAGTGGAAGAGGTGACTGCCTGCCCAAGTGATAAAGCCTCAGAGCAGACCTTAGACACCCCAGTGCCTACACCAAGTGAACCAGAGTCTTTTTGCAGTCACCAAGAGGGGAGAGGCGAGGATGCAGAGTTCAGTGAGAGCAGAACAACTACTCCTGTTTGCACCCCAGCATCTAATGATTCCATTTCTTTAGTGCCCACCTCTATACCAGACTCGCTGCCAAGATTTGGTGCCCAGGGTGTGGATGTCATCAGGACCTTGGCAGCTTCGTCTCAACCCTGGGAAGGTGAAAAGAATAGTGATGAGCATCACCCAGGGACAACTGGAGTTATCCAGCATGGCTCAGACTTGAAAATGCCCAAAGAGACACTTGTTACAGCACGAAATGGATGGGTAGAAAGCAGTGAAGAGCATTCCATGAGAGAGGACATGATACAAGAGCATAGGAATGGAGGAAGTGATGCTAAATATAAATCAGTCTCTTTGCCTTGTCTACCAAGTAATGGTGAGGAAGACACTGGAGGACACAGTGATTCTACAGAGACAGCATctgattttgaaaatgaaactcAAGAGGATGAAACACTGGACTGGCATGGAACCCAGATGGATAGTAACGTGCAAGCTCAGAATACAAAGTTGCAGAATCAACCTGTCATTCAGACCTCAAGTCGTCTCACTTCAATGTTGAATCCTCCTCAGCACCAGCAACCAGTAATACAAGCCCATATATCTAACTCCAACCATACTCAAACTGTCATTCAGGCTCGCTTCCCTAATGGTGTGCCAAACCAGTCCATCATTCATCCCCACAAGCAGCATCCAATTCACAGCCATGCTATAAACCATGCTCAGGACCAGATTGCCACTGTGCCCTCACAAGCCCAAACGCAAGCATACCTGACGCAGGCAGAGAGGGACCAAAGTAGGAATCTACGACTGAATGATAATGGCAATGGAGTGAAGCTGTTTGTCTCAGCAGATGATGACACCAAACCTCTCAGCAGAGGGCCTGGAGAAGATTTTGCTTTAAAGAATATTGCAGTTCCTCCCGTTGGCAGAAGAGCGCAAGGTTCATCTCGACCAGTTTCCTCTGTAGAGGCCAACAACCCTCTTGTCACCCAGCTTCTTCAAGGCAGCCTACCCTTAGAAAAGGTTTTACCCCAGCCTCACTCAGTCAGCAAGCTGGAAATTAACCGACTTCCAGGTGCCCCTGCCATTAACTCAACCAGTCGACAACCTCCACGAAATTTGGGACCACGTTTTAGAGGCCCGTCTGAGTCAGGAGGACCTATAGAAACTGGTGGATCTGACTTCCAAAACAAAGCCTCTTCTGCCCGAGTGTCTCCTGGGCCTGGTCGGAACTTTGGTTCTTCACCACCGGGTTCTACTCCATCTCGAATGGCATGCTTGTTTGAGGAAGCTAGCCCAAGATCCACAAATGTTCAGTTCACTTCTCAACAACCCGGAGGTGCAGTGCCTCCCGGAGCAGTACCTGTCATAACATCCCTCCCTTCAAACTCTTCTGCCAGAACCTCAATGGATGTGAACTCTCAGAATGCTGCAGTTTATGAATCGGCTGTCATTAAAGAGCATCCTGGACCTCTTCCTCCAAGGGGTGAAACTCCAGAGAGGCCAGCTAGCTTTCAACAGCATCCTAACAATCTTTCTCAGTCTGTGTGCAGAACCACACCTGATACTCCCTCACCTCCACATGGTGACCTTTGTCCATCAGAGGTTGTACCTACTGTTAAGATTAACTGGCGCCCGAGCAAACCCCAACCACCTCAGCATCAGATGTATCAGCAACAGCTATCTCCTGTAGCTACAGTAAAGAATGAAGTTTCCTCACGCCCTTCGTGCCAACAAGCTCTGACCAAAAACTCAACTGCTCCAAACAGTGGCAATACTTCTGTTGTAATAACCAAAAAGGAGCCTCTGGACAATTTTCATGGAGGTGGAGGAGCTATGGAAGGACTGCTAAATATGGAAATGTCTCTAGTTAGAATGGCCAAGAAGGAACAAGTCAAAAATCCATATACCCGCCAAGCAGACACCTCCGTTTCTCCTGTTTCCTCCTCTCCTTCCTCATCAGCCTCCAGTCTCCCTTACCAGCTATATGGTAAGCTACCAAAACTACAGCAGAGTGGGGGCAATGGAGGGTCCTCATCAAGCTTCAGTTACACAGCTAATGTGTCTGTGGTGGATGGTAGTGGGTTCTCCCGCAGTTTAGCCGATGGGGTGCTACAGCTAAGGCCACGCGTGAGCGTCAGCAACAGCGGAGGCCAGAATGCTACGCTTAGCATTCAGGCATTTGCGGACAGTGCTGCAGAAGAAGTGGCTCTCAAGTGTTCCTGTCGACTAAAGGCTATGATTATGTGCCAGGGCTGTGGCGCTTTCTGCCATGACGATTGCATTGGCCCCTCAAAACTGTGTGTCTCATGTCTGGTTGTCAGATAGTTTGTTGCAGCTCCTCCAAACTGAGCCGGTTGGTCAGAGCAAATGCTTTGACCACTCCAGACAATTCTAGCCCTTTGCCTGTGGTTGGATACCACTGAAAGTCTTGGACTCTTTTGAGCAAAGAATGAAGCAGGACACTGCGTTGATTTAAATGggacagttgttttttttgtttgtttttgtttttttgatggGCCAGGCAATACAATAGGGCTGGAAGATTActtgtaagataaaaaaaattcagtctgtatttttgttgcatATTTTTTCTATTGCTGTTatggtgttattattattaatattattattattatgattacaataataatgatattgttgttattattattattattggtattacGTGAATTTACATGGCACGGTTGATTGTaaattgtgcctttttttcccccaacaaAACATTTACCTCATCTTCTTGACAACAGTCATCAGTTCAGTGTGAAAATGGTGGCgttcctgtttgttttcttctcttgAATTCCTCTCAGTGAAGAGAGCTTTAGGAGAATTTTGTGTGTAATGTCTtgcaaagattatttttttaatcattaaataagaaaatacattttggttattttgtaAGTGCTTTCACTCTtctttttgtttccatttttattttcttatccAAAGTGAAGTTCAGTCTGTACTTGGCGGTTAAGCACAGTATTCACATCTAATAAAGCTGAAAGTAAACAAAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11471 ASXL; additional sex combs-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231560 lncRNA downstream 44149 10387873 ~ 10388615 (-) True G156364
TU231562 lncRNA downstream 45074 10386954 ~ 10387690 (-) False G156364
TU231559 lncRNA downstream 45268 10386954 ~ 10387496 (-) False G156364
TU231551 lncRNA downstream 75147 10355954 ~ 10357617 (-) False LOC122329224
TU231535 lncRNA downstream 80883 10348141 ~ 10351881 (-) True G156341
TU231691 lncRNA upstream 93682 10540899 ~ 10542887 (-) True G156452
TU231700 lncRNA upstream 220740 10667957 ~ 10675579 (-) False G156459
TU231701 lncRNA upstream 220740 10667957 ~ 10675579 (-) True G156459
TU231718 lncRNA upstream 249235 10696452 ~ 10696677 (-) True G156468
TU231719 lncRNA upstream 251380 10698597 ~ 10700224 (-) True G156469
XM_043224715.1 mRNA downstream 65442 10363905 ~ 10367322 (-) True LOC122328779
XM_043225415.1 mRNA downstream 72978 10355941 ~ 10359786 (-) True LOC122329224
XM_043224716.1 mRNA downstream 86672 10343250 ~ 10346092 (-) True LOC122328780
XM_043224693.1 mRNA downstream 152233 10243928 ~ 10280531 (-) False LOC122328770
XM_043225420.1 mRNA upstream 2268 10449485 ~ 10456918 (-) True LOC122329230
XM_043224135.1 mRNA upstream 69499 10516716 ~ 10521072 (-) False LOC122328445
XM_043224134.1 mRNA upstream 69499 10516716 ~ 10521072 (-) True LOC122328445
XM_043224136.1 mRNA upstream 74881 10522098 ~ 10525372 (-) True LOC122328446
XM_043224620.1 mRNA upstream 121348 10568565 ~ 10582430 (-) False LOC122328736
TU231532 other downstream 65395 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 193491 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 200845 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 599082 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 599131 9832128 ~ 9833633 (-) False zgc:153284
TU231697 other upstream 228467 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 653527 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 1070793 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 1294183 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 1294183 11741400 ~ 11746620 (-) True LOC122328546

Expression Profile